Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq76 129 2e-24 seq25 102 2e-16 seq223 93.3 1e-13 seq142 91.5 4e-13 >seq76 Length=131010 Score = 129 bits (142), Expect = 2e-24 Identities = 406/627 (65%), Gaps = 9/627 (1%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || ||||||||| ||||| ||| || || |||||| || | |||||| ||||| Sbjct 91048 GTACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTT 91107 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| |||||||||||||| || ||| | ||| |||| ||||| | || || Sbjct 91108 GCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGC 91167 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || ||||| ||| || | |||| || || |||| |||| || || Sbjct 91168 CTCAAGAATAGAGTACCAAAGCTTTTGGGCTTTGATGCTCTTGCGACCCTTGCCCTCAGA 91227 Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869 ||| |||||| ||||| || | | | || |||||||| ||| || ||||| || Sbjct 91228 CTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGACA 91287 Query 155870 CTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAATAC 155926 || | ||||| | || | ||| | || || | ||||||| ||| || | Sbjct 91288 CTCGTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTC---AACACGCTTCATGAAGAG 91344 Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986 ||| ||| | ||| || || || || | || |||||| | ||||| || Sbjct 91345 ATCTGGAATCCAGAGAGCGTAAAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTT 91404 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 ||| || || || | ||| || || ||| | || |||||| || || || || || Sbjct 91405 CTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAA 91464 Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 | |||| | |||| ||||| ||||| ||||| | || || || || || || | Sbjct 91465 AGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTAAAAACTCT 91524 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163 |||||||||| || || ||||| | || ||||| ||| ||||| | ||||| | Sbjct 91525 GAGCATAGGAACGATTCCGTTGGAGTTTCCGTTGGTACCGGCAATATAAGCACCAGTAGC 91584 Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTC 156223 || | | |||| | || || |||||||| | || ||||| ||| || Sbjct 91585 ACGGATTCTGTGAACGTTGAGACCGATACCACCAGCGTTCTTTGAAATCATAGCACAAAT 91644 Query 156224 CTTTACAGTATTGAAAATACCTTCAAT 156250 ||| | || | | ||||||| ||||| Sbjct 91645 CTTCAATGTGTCGTAAATACCATCAAT 91671 >seq25 Length=196012 Score = 102 bits (112), Expect = 2e-16 Identities = 208/307 (68%), Gaps = 4/307 (1%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||| || |||| |||||||||||||| | | || || ||| | ||| |||| Sbjct 53104 CCAACTGCGTCAAGTTCGTCAATGAAAACAATAGCAGGTGATTTTCCCTTGGCAGCTGCA 53163 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 |||||||| | || || ||| || | |||||| || | ||| | |||||||| | Sbjct 53164 AATAATTCACGAACTCGCTTTGCACCTACACCAACGTAGACTTCGTCGAATTCAGA--CC 53221 Query 289150 GATACTTGA--ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 | || ||| | ||||| || ||||| ||||| ||||| | |||| ||| |||| Sbjct 53222 CAGACATGAAGAAGAATGGAACGCCAGCTTCACCTGCAACTGCTCGAGCCAAAAGAGTCT 53281 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267 | || || ||||| || || | | || || ||||| || | ||| | ||| || Sbjct 53282 TTCCGGTACCAGGAGGACCAACCAGGAGTACACCCTTCGGAAGTTTGCCACCAAGAGTAG 53341 Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 | || || ||| ||||||| ||||| || | || | ||||| | ||||||||| | Sbjct 53342 AGAACTTTTCGGGGTTCTTTAAGAATTCCACGAGATCTTGGAGTTCTTCTTTTGCCTCGT 53401 Query 289328 CACATCC 289334 | || || Sbjct 53402 CGCAACC 53408 >seq223 Length=893608 Score = 93.3 bits (102), Expect = 1e-13 Identities = 177/261 (68%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | |||||| ||||||||||||||| || || || || || ||||| || || Sbjct 461911 CTTGACAAGACGACGTTGAATATAACCAGTTTCAGCAGTCTTCACTGCGGTATCGATGAG 461852 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAA 302702 ||| |||||||| |||| || ||||| || | ||| ||| || ||| | || | | Sbjct 461851 ACCTTCACGACCAGCCATGGCGTGGAAAAAGAACTCGGTTGGTGTTAACCCACGAAGATA 461792 Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762 ||| | ||||| || || | | || || || | || ||| || || || || || Sbjct 461791 TGAGTTTTCAACAAATCCTCTTGATTCTGGGGAGTAATCATCCTTTGTGAAATGAGGAAG 461732 Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCA 302822 || | || | | ||| | || || |||||||| || || ||||| || | | Sbjct 461731 TGTTCGGTATTTGAATCCGAAAGGAATGCGCTTTCCTTCCACAGATTGCTGACCAACGAG 461672 Query 302823 CGAAATCATCTGCGAAATATT 302843 || | ||||||| || ||||| Sbjct 461671 CGCAGTCATCTGAGAGATATT 461651 Score = 89.7 bits (98), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || |||||| |||| ||||| ||| || | ||||| ||| Sbjct 462702 AGAATTTCCTTCAGACGAGGTACACCAAGGGTGACGTT---CTTCGAAGACACACCTGCA 462646 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||||||||| || || | ||| || | || || |||||| ||| || |||| Sbjct 462645 AAATGGAAAGTATTGAGCGTCATTTGCGTCGCGGGTTCTCCAATAGATTGAGCAGCAAGG 462586 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||||| || Sbjct 462585 ACTCCAACCATTTCTCCAGG 462566 >seq142 Length=86302 Score = 91.5 bits (100), Expect = 4e-13 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || || || ||||||||| ||||| || |||||||||||||| | || ||| || | Sbjct 80229 TGAGCAATTGTCATACGAGACGGAATGGCGTGGGGATTGATGATAAGATCTGGTA-CAAT 80287 Query 251899 CCATCAGCA-GTGAAGGGCATATCCTTT-TCCTCAATAA-TGTTTCCAATAGTTCCCTTT 251955 | | ||| ||||||||||| |||| |||| ||| | | |||||||| ||||| Sbjct 80288 GCCTTGGCAAGTGAAGGGCATGTCCTCCATCCT--ATACGTAATACCAATAGTACCCTTC 80345 Query 251956 TGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||||||||||| ||||| |||||||| Sbjct 80346 TGTCCGTGACGAGAAGCAAACTTGTCACCAAT 80377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471807624296273