Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq135 120 4e-21 seq101 100 3e-15 seq76 100 3e-15 >seq135 Length=1018801 Score = 120 bits (132), Expect = 4e-21 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| |||||||||| ||||||||||| || | ||| | || |||||| | || |||||| Sbjct 869254 GCCTCCAACTACCTTGACATCAAGCCACTCTTGGATGTCGGATGCAAGACCGTCGCCAAC 869195 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| || ||||| ||||| |||||||| ||||||| Sbjct 869194 ATGATCAAGGGCAAGTCTCCAGAGGAAATCCGAAAGACCTTCAACATCA 869146 >seq101 Length=586485 Score = 100 bits (110), Expect = 3e-15 Identities = 173/251 (69%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||| ||||| ||||| ||| | |||||| | |||| Sbjct 137767 GAGTGGATGTTCTCCATCATGATTTGGAAACCGTAGAAGAATCGGGCCTCTGGGATTTGG 137708 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || | |||| || || ||||| ||| || || ||||| ||| ||||| Sbjct 137707 ACTTCACTGCTGAAGCGCTCGAGGAGGTTTTCGTTGACAATTCCGTCAGAGGCAGCGAAG 137648 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGTGG 869809 ||||| |||||||| ||| |||| |||||||| ||| ||||| ||||| | Sbjct 137647 AAAGCGAGGACGTGGGAGATGAAGTAACGCTCGTCATCGTTGAGCTTGTTGTTCCAGTCG 137588 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | || | || || | ||||||||| ||||||| || || |||||||| ||| Sbjct 137587 TGGAGATCCTTGGATAGATCAATCTCCTCGGCAGTCCAGAATGAAGCTTCGGCCTTCTTG 137528 Query 869870 TACATCTCCCA 869880 ||||| | ||| Sbjct 137527 TACATTTGCCA 137517 Score = 96.9 bits (106), Expect = 4e-14 Identities = 140/196 (71%), Gaps = 9/196 (5%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| || ||||| |||||| |||| || || | ||||||||| ||||| Sbjct 138103 ACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACGCTT 138044 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||| | ||| ||||||| | |||| ||| ||| ||||| ||||| || ||||| || Sbjct 138043 CTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATACCCTCAACAGCGGCGAA 137984 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTT---GATCCACTTCATCGC 869355 | | | || || | |||||||||| || |||||||| |||||| | || Sbjct 137983 GGCAACAAGACGTTGGGCAAAGGTG--GA----CTCCTTGTCTTGGATCCATCGGACAGC 137930 Query 869356 CCAGTCGGCCTTTTTC 869371 |||||||||||| ||| Sbjct 137929 CCAGTCGGCCTTCTTC 137914 Score = 93.3 bits (102), Expect = 5e-13 Identities = 155/223 (70%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 868718 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGGC 868777 || || ||||||||||| || | || ||||| |||||| | ||| ||||||| Sbjct 138390 TCAAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTCTCCATAAAGTCGAATGGGTTGGTA 138331 Query 868778 GTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGATG 868837 |||||| ||| || ||||| || ||| || || || ||||| ||||| ||| Sbjct 138330 ACCTTGTAAACCTTCTCATTGCCGAGGGAAAGGAGGAGACGATCAGCGACGAACTCAATG 138271 Query 868838 TACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCACA 868897 || || ||| | | |||||||||||||| || || || || | ||| ||| Sbjct 138270 TATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAGAGCACAAGGAAGAGCCTCAGTCAAG 138211 Query 868898 AACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCTGG 868940 ||||||| ||| ||||| || |||||| ||||| | |||||| Sbjct 138210 AACTCTTGCTCAATCTCAACAGCCTCGGTGATGA-CGGCCTGG 138169 >seq76 Length=131010 Score = 100 bits (110), Expect = 3e-15 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 |||| || ||||||||||| || || || || ||||||||| |||||||||||| || Sbjct 91353 TCCAGAGAGCGTAAAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGA 91412 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 1628582 ||||||| | |||| || ||||||||||| ||||| |||||| ||| || || || Sbjct 91413 GGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACC 91470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107095787782693