Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq400 131 2e-25 seq486 91.5 1e-13 >seq400 Length=416305 Score = 131 bits (144), Expect = 2e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 |||||||| ||||| || || || || || | ||||||| | || | || || Sbjct 399067 ACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCCGACACCATCGATAACGTCAAGTCC 399126 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| || ||||| ||||| |||||||||||||||||||||||||| || Sbjct 399127 AAGATCCAGGACAAGGAGGGAATTCCTCCAGATCAACAACGTTTGATCTTTGCCGGAAAG 399186 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| |||||| | | |||| ||||| ||||| || ||||| || || || ||| Sbjct 399187 CAGCTCGAGGATGGACGTACTCTGTCTGATTACAACATCCAGAAGGAGTCCACCCTTCAC 399246 Query 24908 TTGGT 24912 ||||| Sbjct 399247 TTGGT 399251 Score = 104 bits (114), Expect = 2e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || |||||||| | ||||| || | | Sbjct 399784 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACTATTACATTGGAAGTGGAGTCTTCA 399843 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || ||||||||| || || || || || || || |||||| Sbjct 399844 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGATCAA 399903 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCA--GATTA 24879 || || ||||| || ||||| || || |||||||| ||| ||| ||| ||||| Sbjct 399904 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGTCG---TACA-CTCAGCGATTA 399959 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| || | ||||||||| | || | || ||||| Sbjct 399960 CAACATTCAAAAGGAGAGCACTTTGCACTTGGTGCTTCGTCTTCGTGGAGG 400010 >seq486 Length=791322 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || ||||| || ||||| | ||||| || | | |||||| | || | Sbjct 145116 AAGACCCTTACGGGTAAGACCATTACATTGGAAGTTGAGTCTTCGGACACAATCGATAAT 145057 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||| ||||| || || || || || || ||||||||||||||||| Sbjct 145056 GTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAACAACGTTTGATCTTC 144997 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGG 24893 || || || || || |||||| | | | |||||||| ||||| ||||||| Sbjct 144996 GCTGGAAAGCAACTCGAGGATGGACGCACTCTTTCAGATTACAACATCCAAAAGG 144942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449894625052120