Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq135 125 1e-22 seq76 91.5 2e-12 seq101 87.8 3e-11 >seq135 Length=1018801 Score = 125 bits (138), Expect = 1e-22 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| |||||||||| ||||||||||| ||| | ||| | || ||||||||||| |||||| Sbjct 869254 GCCTCCAACTACCTTGACATCAAGCCACTCTTGGATGTCGGATGCAAGACCGTCGCCAAC 869195 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| || ||||| ||||| |||||||| ||||||| Sbjct 869194 ATGATCAAGGGCAAGTCTCCAGAGGAAATCCGAAAGACCTTCAACATCA 869146 >seq76 Length=131010 Score = 91.5 bits (100), Expect = 2e-12 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2071877 TCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCA 2071936 |||| || ||||||||||||| || || || ||||||||| |||||||||||| | Sbjct 91353 TCCAGAGAGCGTAAAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGA 91412 Query 2071937 GGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 2071994 ||||||| | |||| | ||||||||||| ||||| |||||| ||| || || || Sbjct 91413 GGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACC 91470 >seq101 Length=586485 Score = 87.8 bits (96), Expect = 3e-11 Identities = 154/223 (69%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 793926 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCC 793985 || || ||||||||||| || | || ||||| |||||| | ||| ||||||| Sbjct 138390 TCAAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTCTCCATAAAGTCGAATGGGTTGGTA 138331 Query 793986 GTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATG 794045 | ||| |||||| ||||| || || || || || |||||||| |||||| Sbjct 138330 ACCTTGTAAACCTTCTCATTGCCGAGGGAAAGGAGGAGACGATCAGCGACGAACTCAATG 138271 Query 794046 TACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACA 794105 || || ||| | | |||||||||||||| || || || || | ||| | | Sbjct 138270 TATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAGAGCACAAGGAAGAGCCTCAGTCAAG 138211 Query 794106 AACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGG 794148 ||||||| ||| ||||| || |||||| |||||| | |||||| Sbjct 138210 AACTCTTGCTCAATCTCAACAGCCTCGGTGATGA-CGGCCTGG 138169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916190127857231