Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq224 114 8e-21 seq400 102 5e-17 seq486 91.5 1e-13 >seq224 Length=493007 Score = 114 bits (126), Expect = 8e-21 Identities = 142/192 (74%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 34768 GACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTC 34827 ||| || |||| ||| ||||||||| ||||| |||||||| ||| | || | || || Sbjct 271533 GACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCTTC 271592 Query 34828 CAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTT 34887 |||||||| ||||||||||| || ||||| || || | || | ||||||||||| | Sbjct 271593 GAGTTGCTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGGATTCCCTCCTTGTCCTG 271652 Query 34888 TATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGG 34943 || || |||||| || ||||||| ||| | | |||||| || | ||| |||| Sbjct 271653 GATCTTGGATTTGAC--AT--TATCGATCGTGTCACTCGACTCGACCTCGAGGGTGATGG 271708 Query 34944 TCTTTCCCGTGA 34955 |||| ||||||| Sbjct 271709 TCTTGCCCGTGA 271720 >seq400 Length=416305 Score = 102 bits (112), Expect = 5e-17 Identities = 188/270 (70%), Gaps = 13/270 (5%) Strand=Plus/Minus Query 34713 AGACCCCCTCTTCGGTACATATGCATATCCAATCATT-TCCTCCCCTCAACCTCAGGACC 34771 ||| ||| || ||| | ||||| | | || ||||| |||||| | | | || ||| Sbjct 400045 AGAACCCATC--CGGAAAATATGTACA--CACTCATTGTCCTCCACGAAGACGAAGCACC 399990 Query 34772 AGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGT 34831 | ||| | ||||||||||| |||||||| || || || | || |||| |||| | Sbjct 399989 AAGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTGAGTGTACGACCATCCTCCAAT 399930 Query 34832 TGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATT 34891 ||||| |||||||| |||| ||| || || ||| | || | |||||||| || | || Sbjct 399929 TGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGAATACCCTCCTTATCCTGGATC 399870 Query 34892 TTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTT 34947 ||| ||||| || |||| || || | ||| || || | || || ||||| Sbjct 399869 TTTGACTTGAC--AT--TATCAATTGTGTCTGAAGACTCCACTTCCAATGTAATAGTCTT 399814 Query 34948 TCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| | |||||| |||||||||||||| Sbjct 399813 GCCCGTCAAGGTCTTGACAAAGATCTGCAT 399784 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 8/194 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| |||| ||||||||| ||||| || || || || | || |||| Sbjct 399254 AGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCC 399195 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||||||||| ||||||| ||||| || ||| | || | ||||||||||| Sbjct 399194 TCGAGCTGCTTTCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATTCCCTCCTTGTCC 399135 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| | ||||||| || | ||| || |||| ||| || Sbjct 399134 TGGATCTTGGACTTGAC----GTTATCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 399079 Query 34942 GGTCTTTCCCGTGA 34955 ||||| || |||| Sbjct 399078 AGTCTTACCGGTGA 399065 Score = 87.8 bits (96), Expect = 1e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| ||||| |||||||| || |||| | || || |||||||| || || ||| Sbjct 399518 TCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAAG 399459 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || ||||| ||||| | || | ||||||||||| | || || |||||| Sbjct 399458 ATAAGACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTG 399399 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || | ||| || || | ||| |||||||| || || | |||||| ||| Sbjct 399398 TCGATAGTATCCGATGACTCCACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACA 399339 Query 34967 A 34967 | Sbjct 399338 A 399338 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| |||| || |||||| || || || ||||| || | | | || |||| Sbjct 399767 AGGACCAAATGAAGTGTAGACTCCTTTTGGATATTGTAGTCGGACAAGGTTCGGCCATCC 399708 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||| || ||||| || ||||| || ||||| | || | |||||||| || Sbjct 399707 TCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCC 399648 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || || || || ||||||| || | ||| || || | || || Sbjct 399647 TGAATCTTCGACTTCAC--AT--TATCGATAGTATCCGATGACTCCACCTCGAGAGTGAT 399592 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || ||||||||||| || ||||| ||||| Sbjct 399591 GGTCTTCCCGGTGAGGGTCTTGACGAAGATTTGCAT 399556 >seq486 Length=791322 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/186 (72%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||| || ||||| || || || || |||| |||| || ||||||||||| ||||||| Sbjct 144942 CCTTTTGGATGTTGTAATCTGAAAGAGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGA 145001 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| ||||| ||||| | || | ||||||||||| | || || ||||| || Sbjct 145002 TCAAACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT- 145058 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 ||||||| || | ||| || || | || |||||||| ||||| |||||||| Sbjct 145059 -TATCGATTGTGTCCGAAGACTCAACTTCCAATGTAATGGTCTTACCCGTAAGGGTCTTG 145117 Query 34964 ACAAAG 34969 || ||| Sbjct 145118 ACGAAG 145123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325690700197451