Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2 118 8e-21 seq4 116 3e-20 seq223 87.8 1e-11 >seq2 Length=651517 Score = 118 bits (130), Expect = 8e-21 Identities = 450/701 (64%), Gaps = 4/701 (1%) Strand=Plus/Minus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 || ||||||||||| ||||| ||||| ||||| | |||| |||| || | | ||| Sbjct 502840 ACGAGACGATTATCGAAATCCTCACCACCCAAGTGCGTATCACCTGCGGTGGACTTGACT 502781 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | || | || || || | | ||| || | ||||| ||||| ||||| | |||| Sbjct 502780 TCAAAGATACCCTCCTCGATGGTCAAGAGCGAGACATCGAAAGTTCCTCCACCAAGATCA 502721 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 || || || || || || || || || || |||||||| |||| || ||| Sbjct 502720 AAGATGAGAACGTTTCGCTCACCCTCAACCTTCTTGTCGAGACCATATGCAATGGCGGCA 502661 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 || || || || || || |||| | ||| || |||||||| || || || || || Sbjct 502660 GCGGTAGGCTCGTTGATGATTCGGAGAACGTTGAGACCAGCGATCAAACCGGCGTCCTTG 502601 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT-AC 282480 |||||||| | |||||||||| |||| ||||| || || || | ||||| | |||| || Sbjct 502600 GTGGCTTGACGTTGTGAATCGGTAAAGTATGCTGGGACGGTCACGACGGCGT-TGTTGAC 502542 Query 282481 TTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAAT 282540 | |||| || || || || | | |||| || || ||||| || || || Sbjct 502541 GGTTCCACCAAGGTACGCCTCGGCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAGAT 502482 Query 282541 TTGTTCTGGAGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTAT 282599 || ||||| | ||||||| || |||| | | || | | | || || Sbjct 502481 TTCCTCTGGTGTGAATTGCTTCTTCTCGCCCTTGAACTCAATCTCGACGACA-GGCTTTC 502423 Query 282600 TACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCAT 282659 |||| | | || | || || | | |||||||| | || || ||||| Sbjct 502422 CACCACGGTCGAGGACGGTGAAGGGAAAGTGCTTCATATCAGCCTGGACTTCCTGGTCTG 502363 Query 282660 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAG 282719 || | | || || | || ||||| ||||| | || |||| || || | ||| Sbjct 502362 CGAACTTGCGTCCGATCAGACGCTTTGCGTCAAAGACTGTGTTGGCGGGGTTCATGGCAA 502303 Query 282720 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 282779 |||| | || || |||||||| |||||| | || || ||||| || | ||| | || | Sbjct 502302 CTTGGTTCTTTGCGGCATCTCCGATCAGACGCTCGGTATCTGTGAAGGCAACGAAGGAAG 502243 Query 282780 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 282839 | || || || || || || || || || ||||| |||| | | ||| | | | || Sbjct 502242 GGGTGGTTCGGTTTCCCTGGTCGTTGGCGATAATCTCAATTCGATCATCACGATAGATAC 502183 Query 282840 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880 | ||||| | || ||||| | ||| ||||| || ||| Sbjct 502182 CCACACAGGAGTAGGTGGTTCCAAGATCGATACCTATGGCA 502142 Score = 111 bits (122), Expect = 1e-18 Identities = 317/482 (66%), Gaps = 9/482 (2%) Strand=Plus/Minus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 || || |||||||| | |||||| ||||| || ||||| ||||| || | | |||||| Sbjct 503639 ATTCCGTTGGCATCAACATCAAAGGTGACCTCGATTTGTGGGACACCACGTGGTGCAGGT 503580 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || | | ||| | |||| | || || || || ||| || || ||| Sbjct 503579 GGGATACCAGTAAGCTCGAATTTACCCAAAAGGTTGTTGTCCTTGGTGCGTTGACGCTCA 503520 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 |||||||| | ||||||| || ||| ||| || || || | || | || || | Sbjct 503519 CCCTCGAAGACTTGGATAAGCACACCAGGTTGGTTGTCGGAGAAGGTGGAGAAGACCTCG 503460 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 || || || ||||| || |||||||| || | |||||||| ||||||||| Sbjct 503459 GACTTCTTGGTTGGAATGGTGGTGTTTCTTGGGATGAGCTTGGTCATTTGACCACCAGCA 503400 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 281738 || || | ||| || || | || | |||||| | |||| || | || | | || Sbjct 503399 GTCTCGATACCGAGGGACAATGGCGCGACATCGAGGAGGAGGATCTCGTTGGTGGACTTG 503340 Query 281739 CATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 | | || | || ||||| || || || | |||||||| ||||||||||| ||| Sbjct 503339 GAAGAGGTGTCTCCGGAGAGAATGGCGGCCTGGACGGCAGCACCGTATGCAACAGCCTCA 503280 Query 281798 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAG---TTGT 281854 ||||| || | | | ||| | | || || ||||| ||| | || || ||| Sbjct 503279 TCAGGGTTGATGGACTTGTTTGGCTCCTTGCCGTTGAAGTAATCGGTAATGAGCTTTTGG 503220 Query 281855 CTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTA 281914 || ||| || ||||||| || ||||| || | || || || || |||| ||||| Sbjct 503219 ATT--CTT-GGGATACGAGTGGAACCTCCGACGAGGACGATCTCGTGAACCTTGGATTTG 503163 Query 281915 TC 281916 || Sbjct 503162 TC 503161 >seq4 Length=230096 Score = 116 bits (128), Expect = 3e-20 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || || || || || |||| |||||||||||||| || |||| | ||||| ||| ||| Sbjct 42153 TTCTCCAGTCCGTATGCAAGCGCAGCAGCAGTTGGCTCGTTAACCACTCTCAGAACGTTA 42094 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 ||||| |||||| || ||||| || |||||||| | |||||||||||| || ||||| Sbjct 42093 AGACCGGCAATTTGACCAGCATCCTTGGTGGCTTGACGTTGTGAATCGTTGAAGTATGCT 42034 Query 282455 GGAACAGTAATAACGGCAT 282473 || || || | |||||||| Sbjct 42033 GGGACTGTGACAACGGCAT 42015 >seq223 Length=893608 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 || || || ||||| | |||||||||||||||||| | || |||| || | || ||| Sbjct 461816 GAGTTCTTTTTCCACGCCATGGCTGGTCGTGAAGGTCTCATCGATACCGCAGTGAAGACT 461875 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAA 435252 ||||| ||||||||||||||| | ||||||||| ||||| ||| | | || Sbjct 461876 GCTGAAACTGGTTATATTCAACGTCGTCTTGTCAAGGCACTTGAGGATGTCATTGCTAAA 461935 Query 435253 TATGATGGTACAGTGAGAAAT 435273 |||||||| || || ||||| Sbjct 461936 TATGATGGAACTGTCCGAAAT 461956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740604428335554