Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq400 136 8e-27 >seq400 Length=416305 Score = 136 bits (150), Expect = 8e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| ||||||||||||||||| ||||| || || || || || ||| | | ||| Sbjct 399542 CGGAGAACCAAGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCG 399483 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || ||||| || ||||||||||| || | |||||| || || || || || ||||| Sbjct 399482 TCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGGTCCGGTGGGATGCCCTCCTTG 399423 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| | || || || || || ||||| | || || || | || || Sbjct 399422 TCCTGAATCTTCGACTTGACGTTGTCGATAGTATCCGATGACTCCACCTCGAGGGTGATG 399363 Query 82776 GTCTTGCCTGTCAACGTCTTTACAA 82800 |||||||| ||||| ||||| |||| Sbjct 399362 GTCTTGCCGGTCAAGGTCTTGACAA 399338 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || ||||||| ||| || || || || || ||||| Sbjct 400010 CCTCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTG 399951 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| || || | ||| || || || || || | || ||||||||||| || Sbjct 399950 AGTGTACGACCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGA 399891 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| || ||||||| || ||||| ||||| || || || || ||| Sbjct 399890 ATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCTGAAGACTCCACT 399831 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| ||||| ||||| ||||| |||||||| Sbjct 399830 TCCAATGTAATAGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 399784 Score = 104 bits (114), Expect = 5e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| || || || || ||||| || || ||||||| Sbjct 399271 TACCGCCACGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAG 399212 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || || || || || ||||| |||||||| | | |||||||||||||| Sbjct 399211 ACAGAGTACGTCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGTTGTTGATCTGGAG 399152 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||| || || ||||| | || || || || || || || || || | Sbjct 399151 GAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTATCGATGGTGTCGGAAGACTCCA 399092 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGT 82786 | || | || || ||||| || || Sbjct 399091 CCTCAAGGGTGATAGTCTTACCGGT 399067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981820545359331