Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq76 134 3e-26 >seq76 Length=131010 Score = 134 bits (148), Expect = 3e-26 Identities = 509/788 (65%), Gaps = 23/788 (3%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 || || |||||||| || || || || | ||| | || ||| || ||||| ||||| Sbjct 91920 TACTTCGGTTTCAAGACCCTCGAGCGATCATATCTCCTCCGTCTCGATGGCAAGATCTGC 91861 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 || ||||| ||||| ||| || | ||||||||| | || || || || | ||||| | Sbjct 91860 GAGCGTCCACAACATATGATTATGCGTGTTGCGGTGGGAATACACGGTGAGGATATCGAG 91801 Query 110424 GCTGTTATTGAATGTTA-----TGATGTATTAAGTAAAAAGAAAGCT--ATTCATGCTAC 110476 |||| || || || |||||| || ||| | || | || || | Sbjct 91800 GCTGCCATCGAGACCTACAACTTGATGTCC--AGCAAATA-----CTTCACCCACGCCTC 91748 Query 110477 TCCTACCCTATTTAACGCAGGAACTAATGGAGG-ACAATTGGCTTCTTGCTTTCTTCTAG 110535 || ||||| || || || || | ||| |||| | | || ||||| || | | Sbjct 91747 CCCCACCCTTTTCGCAGCTGGTAC-ACCACAGGCACAACTTTCATCCTGCTTCCTGATCG 91689 Query 110536 GAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC-TGCTCTTATT 110594 || || || || ||||| |||||||| || | || |||| |||| | ||| Sbjct 91688 ACATGAAGGAGGACAGCATTGATGGTATTTACGACACA-TTGAAGATTTGTGCTATGATT 91630 Query 110595 TCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAAT 110654 || || ||| |||| || || ||| | ||||||| || || | | || || || Sbjct 91629 TCAAAGAACGCTGGTGGTATCGGTCTCAACGTTCACAGAATCCGTGCTACTGGTGCTTAT 91570 Query 110655 ATCGCAACAGCGAAGGGTG-CTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGA 110713 || || | || || || |||| ||| | ||||| ||| | ||||| || ||| | Sbjct 91569 ATTGCCGGTACCAACGGAAACTCCAAC-GGAATCGTTCCTATGCTCAGAGTTTTTAACAA 91511 Query 110714 CACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCT 110770 ||| || | |||||| ||||||||||| ||| | ||| | || || ||||| || Sbjct 91510 CACCGCCAGATATGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCTTTCGCCATCTACCT 91451 Query 110771 CGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGA 110830 || || ||||| | ||| | || || ||| | || || || || || || ||| || Sbjct 91450 TGAGCCATGGCACGCCGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCACGGAAAGGA 91391 Query 110831 AGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACG 110890 || | || |||||| | ||||| || | |||||| ||||| | |||||||| || Sbjct 91390 GGAGGTTCGTGCCCGTGATCTCTTTTACGCTCTCTGGATTCCAGATCTCTTCATGAAGCG 91331 Query 110891 TGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGA 110950 |||| || | || | ||| | | ||||| ||| | | ||||||| | | || Sbjct 91330 TGTTGAAAAGAACCTCGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGCCGA 91271 Query 110951 TGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCG 111010 ||| || || | ||||| |||| | || || ||||| || || |||||| ||| Sbjct 91270 TGTCTACGGTGACGAGTTCGAAGCGTTGTATGAGAAATACGAGTCTGAGGGCAAGGGTCG 91211 Query 111011 CAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGG 111070 ||| || ||| ||| | ||||||| | || ||||| | ||| ||| || || Sbjct 91210 CAAGAGCATCAAAGCCCAAAAGCTTTGGTACTCTATTCTTGAGGCTCAAACTGAGACCGG 91151 Query 111071 AACTCCTT 111078 || |||| Sbjct 91150 AAACCCTT 91143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186804756005369