Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq400 120 2e-22 >seq400 Length=416305 Score = 120 bits (132), Expect = 2e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | |||||| || | ||||||||| ||||| |||||||||||| |||||| || | Sbjct 399999 ACGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTGAGTGTACGACC 399940 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || |||||||| || ||||| |||||||| ||||| |||||| | || | ||| || || Sbjct 399939 ATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGAATACCCTCCTT 399880 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 || || || || | |||| || | ||||| || ||||| || | || | Sbjct 399879 ATCCTGGATCTT-TGACTTGACATTATCAATTGTGTCTGAAGACTCCACTTCCAATGTAA 399821 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || || || || || || ||||||||||||||| Sbjct 399820 TAGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATA 399783 Score = 82.4 bits (90), Expect = 5e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || ||| ||| || || ||||||||||| || || || ||| | || || Sbjct 399251 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCCTCG 399192 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || ||||||||||| |||||||| || |||||| | || | || || ||||| Sbjct 399191 AGCTGCTTTCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATTCCCTCCTTGTCCTGG 399132 Query 33661 ATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTA 33720 || || || | || | ||||||| || ||||| |||| ||||| || ||| Sbjct 399131 ATCTTGGACTTGACGTTATCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTA 399072 Query 33721 CCTGT 33725 || || Sbjct 399071 CCGGT 399067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328701880783680