Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq400 95.1 3e-14 seq79 84.2 5e-11 >seq400 Length=416305 Score = 95.1 bits (104), Expect = 3e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 206192 TCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGC 206251 |||| || || || ||||| | || ||||| ||| ||||| |||| || ||| Sbjct 399065 TCACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCCGACACCATCGATAACGTCAAGT 399124 Query 206252 AAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAA 206311 ||||| || || || || |||||| || || ||| | | ||||| ||||||| Sbjct 399125 CCAAGATCCAGGACAAGGAGGGAATTCCTCCAGATCAACAACGTTTGATCTTTGCCGGAA 399184 Query 206312 AGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTC 206371 ||||| | || |||||| | ||| || | ||||||||| ||||||| ||||| || |||| Sbjct 399185 AGCAGCTCGAGGATGGACGTACTCTGTCTGATTACAACATCCAGAAGGAGTCCACCCTTC 399244 Query 206372 AC 206373 || Sbjct 399245 AC 399246 >seq79 Length=601583 Score = 84.2 bits (92), Expect = 5e-11 Identities = 166/244 (68%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 101537 TCAGCCACCTTCCGGAGGTAATTGTGCCTCTTCTCCTTTCTTAATCTCTCGAAACGAAGG 101596 ||||| ||||| |||| |||||||| | ||| |||| | | | ||||||||||| Sbjct 206350 TCAGCAACCTTTCGGACATAATTGTGACGCTTTTCCTCACGAAGACGGGCGAAACGAAGG 206409 Query 101597 GCAGATTGTCCTCCCCTCCCGTGTTTCTTTGGCAAAGAGACGTCAAAATTATGAAGAATT 101656 ||||| ||||| || | ||||| ||||| || | ||| || || || | || Sbjct 206410 GCAGACTGTCCACCACGACCGTGCTTCTTGGGGAGGTCGACTGAGAATTTGTGGACAACG 206469 Query 101657 TTCTTGGTGTTCCCAGAGAGAGTCGCGAAAAGAGCAGAAGAACCGTCAAGAATAATAAAT 101716 | |||||| ||| ||| || ||||||| || ||| || | |||||||||| Sbjct 206470 TCGCGGGTGTTTCCACTGAGGGTTCCGAAAAGCGCTCCGTTACCATCCATAATAATAAAT 206529 Query 101717 CCGAATACATCGGA--AGATGTCAGAAGTTCAGAGAGACACTCGATATGGAATGAACTGT 101774 || ||| || || || ||||||||| | |||| |||| |||||||| ||| Sbjct 206530 CCAAAT--TTCTGATCCGACTCCAGAAGTTCGGCGAGAGCCTCGGTATGGAATTTGTTGT 206587 Query 101775 CGCA 101778 |||| Sbjct 206588 CGCA 206591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181812789840209