Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq400 86.0 6e-12 seq101 82.4 7e-11 >seq400 Length=416305 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | ||||| || | ||||| |||| || || | || | Sbjct 399556 ATGCAAATCTTCGTCAAGACCCTCACCGGGAAGACCATCACTCTCGAGGTGGA-GTCATC 399614 Query 25235 G-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 | |||||||||| | || || || ||| ||||| |||||||| || || || || Sbjct 399615 GGATACTATCGATAATGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGACCA 399674 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351 || ||||||||| || ||||| ||| | || |||| ||| |||| ||| ||| Sbjct 399675 ACAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTC--CGACTAC 399732 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||| ||||| || || || ||||||| || Sbjct 399733 AATATCCAAAAGGAGTCTACACTTCATTTGGT 399764 >seq101 Length=586485 Score = 82.4 bits (90), Expect = 7e-11 Identities = 128/182 (70%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 110712 GCTCGATGATATTATTGTTCACGATGACGTCGGCGGCAGCGAAAAAGGCGAGAACGTGTT 110771 |||||| || || | ||| || || |||| | ||||||||| || ||||| ||||| Sbjct 137691 GCTCGAGGAGGTTTTCGTTGACAATTCCGTCAGAGGCAGCGAAGAAAGCGAGGACGTGGG 137632 Query 110772 TAAGAAAGAATCGTTCCTTGTCGTTCAGTTTATTGTTCCAGTCTTCAAAGTCCTTGGACA 110831 | ||| | || || | ||||| || || ||||||||||| | | |||||||| | Sbjct 137631 AGATGAAGTAACGCTCGTCATCGTTGAGCTTGTTGTTCCAGTCGTGGAGATCCTTGGATA 137572 Query 110832 TGTCGATCTCTTCGACCTTCCAGTGACAATCGACCGCCTTCTTGTACGATTGCCAAAGAT 110891 || ||||| ||| | ||||| || | | |||||||||||| ||||| |||| Sbjct 137571 GATCAATCTCCTCGGCAGTCCAGAATGAAGCTTCGGCCTTCTTGTACATTTGCC--AGAT 137514 Query 110892 CT 110893 || Sbjct 137513 CT 137512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445091456813280