Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq101 129 8e-24 >seq101 Length=586485 Score = 129 bits (142), Expect = 8e-24 Identities = 211/300 (70%), Gaps = 13/300 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || |||||||| || || || ||||| ||||||||| | || | Sbjct 137513 GATCTGGCAAATGTAC-AAGAAGGCCGAAGCTTCATTCTGGACTGCCGAGGAGATTGATC 137571 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| ||| | ||| |||||||| | ||| Sbjct 137572 TATCCAAGGATCTCCACG----ACTGGAACAACAAGCTCAACGATGACGAGCGTTACTTC 137627 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||||||||||| ||| ||||| ||| || || || || ||| ||||| Sbjct 137628 ATCTCCCACGTCCTCGC-TTTCTTCGCTGCCTCTGACGGAATTGTCAACGAAAACCTCCT 137686 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || ||||| | | || |||||| | |||||||| || || || ||||| ||||| || Sbjct 137687 CGAGCGCTTCAGCAGTGAAGTCCAAATCCCAGAGGCCCGATTCTTCTACGGTTTCCAAAT 137746 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || |||||||||||||| || ||||| ||||| || || ||||| ||| ||| Sbjct 137747 CATGATGGAGAACATCCACTCTGAGACATACTCCCTCCTCATAGATACCTATATCATGGA 137806 Score = 89.7 bits (98), Expect = 7e-12 Identities = 138/192 (72%), Gaps = 10/192 (5%) Strand=Plus/Plus Query 1456122 GAAAAAGGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCC 1456178 ||| |||||||||||||| | |||||| |||||||| || || ||||||| Sbjct 137914 GAAGAAGGCCGACTGGGCTGTCCGATGGATCCAAGACAAGGAG----TCCAC-CTTTGCC 137968 Query 1456179 GAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCC 1456237 | || || || | ||| ||||| || ||||| ||||| ||| ||| |||| | || Sbjct 137969 CAACGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGCTCTTTCGCCTCC 138028 Query 1456238 ATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTAT 1456297 ||||| ||| | |||||||| ||||||||| | |||||| ||| |||||| || || Sbjct 138029 ATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTT-ACCTTCTCCAACGAGTTGAT 138087 Query 1456298 CAGTCGCGACGA 1456309 | || ||||| Sbjct 138088 CTCCCGTGACGA 138099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177760176977698