Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq76 237 2e-57 >seq76 Length=131010 Score = 237 bits (262), Expect = 2e-57 Identities = 1130/1776 (64%), Gaps = 35/1776 (2%) Strand=Plus/Plus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || || |||||||||| || || | | ||||| ||||||||||| || || || ||| Sbjct 90098 GTGAATTGAATGGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 90157 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || | |||| || |||||||||||| || | || |||| || || Sbjct 90158 CCCAACTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTCATG 90217 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 || || ||||| |||||| |||||| ||||| || || | || || ||||| | | Sbjct 90218 TGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGACG 90277 Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613 || | ||| | || ||||||| ||||| ||| ||||||||| |||| | | Sbjct 90278 ATGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGGATG 90337 Query 68614 CTCGTA---TTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670 | | | ||||| || ||||||||||| | || || ||||| || | || | Sbjct 90338 TTTGGAACATTTTGGATTGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCGGAC 90397 Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730 || | | | || | | | | || || || || || | ||| ||||| ||| Sbjct 90398 CAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAATTCTCCA 90457 Query 68731 GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCC 68790 | | || | |||| ||| || || ||||||||| || | | || || ||| Sbjct 90458 GCAAGGACACGTCGAGAGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTGAATCCA 90517 Query 68791 AGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCA 68850 ||||||||| || || ||||||||||| || || | ||||| || | | ||| Sbjct 90518 AGAATTTGACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGGATACCG 90577 Query 68851 TGTGTTATGATTTTAT-CTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATT 68909 ||| ||| | | ||| || | ||||||||||||||| | ||| ||| Sbjct 90578 TGTTGAGCGATCTGTTGCTTCAAGCTAGC-CCAATCCCAAAGATCGGTAGGTGTGACACC 90636 Query 68910 CCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGG 68969 ||| | || ||||| || || ||| ||| || || | |||||| ||||| || Sbjct 90637 CCACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCCTTGATATGTCTCATATGG 90696 Query 68970 TCCTTCC-TGTTCAGCTAGTTCAC--AACTTGCCTCTAATGCACCGTAATAAATTGTTTC 69026 || | | || | | | || || | | || ||| ||| ||||| || || Sbjct 90697 ACCATGAATCTTTGCCAACTCCATGGAAGCAGTC---AAAGCAGCGTGGTAAATGGTCTC 90753 Query 69027 GAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAA 69085 |||||| | | || || | |||| || ||| || || || ||| | | | | | Sbjct 90754 GAAAATTTGAATGTTAAGGTGCTTG-GCCTCTGGAGACTCAAAAGGAAGACGAAGAGCCA 90812 Query 69086 TAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAAC 69145 || ||||| || | || ||||| || | | | |||||||| || | ||| | | Sbjct 90813 AGAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATT-GCTC 90871 Query 69146 TTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACT 69204 |||| || || |||| || || || || | ||| ||||| || || | || ||| Sbjct 90872 TTTCTTGCCTCAGGAACTGGGTAGTAGTTGACATCGATAATCTTGTTCAAGTTCTTGACG 90931 Query 69205 ACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCA-AATCGTCCATCTA-TAACAAACA 69262 || |||| || || | || || | |||||| || | | ||| | ||| Sbjct 90932 ACAACTTGGCAGACCTCGTGAAGCTTCTGGAAATCATAAGTGGCAGTCTTCTCGTCGACA 90991 Query 69263 TATTC----AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA--- 69315 ||| || || | || || | ||| ||| || ||||||| | |||| Sbjct 90992 TATGTTGGGAGAGCAAGCGACGCCAAATTGCAACAAGCGACCTCATCTGG---TGCACAG 91048 Query 69316 TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTA 69375 || | | ||||| || || | || | | ||| || || ||||| | || || Sbjct 91049 TACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTG 91108 Query 69376 CTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 69435 |||||| ||| || || ||||||||||| || || || | || || ||| | |||| Sbjct 91109 CTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCC 91168 Query 69436 TCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTT---CTCT 69492 || | |||||| | ||||| || || || | ||||| || ||| ||| Sbjct 91169 TCAAGAATAGAGTACCAAAGCTTTTGGGCTTTGAT---GCTCTTGCGACCCTTGCCCTCA 91225 Query 69493 TTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGA 69552 || |||| ||| | | |||||| || || || | ||||| |||| |||||| Sbjct 91226 GACTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGA 91285 Query 69553 CATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGA 69612 || || || || |||||||||| ||| | | | | ||| || ||||| || ||| Sbjct 91286 CACTCGTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGA 91345 Query 69613 TCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttt 69672 || |||||||| ||||| ||||||||| | || | | || || ||||| || Sbjct 91346 TCTGGAATCCAGAGAGCGTAAAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTC 91405 Query 69673 tttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATG 69732 ||| || ||||| ||||| | || ||| | |||||||| || || || || || | Sbjct 91406 TTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAA 91465 Query 69733 ACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTC 69792 | || || || || || || || ||||| | |||||||| ||||| ||| | ||||| Sbjct 91466 GCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTAAAAACTCTG 91525 Query 69793 AGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCG 69852 ||||| |||| || || || || || || || || || | ||||||| || | || Sbjct 91526 AGCATAGGAACGATTCCGTTGGAGTTTCCGTTGGTACCGGCAATATAAGCACCAGTAGCA 91585 Query 69853 CGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGT 69912 || || | || ||||| || || || || | || || || | ||||||| Sbjct 91586 CGGATTCTGTGAACGTTGAGACCGATACCACCAGCGTTCTTTGAAATCATAGCACAAATC 91645 Query 69913 TTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||||||||| || ||||| || ||||| || || |||||| | || || ||| Sbjct 91646 TTCAATGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATCAGGAAGCAGGAT 91705 Query 69973 GACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCAT 70032 || | ||| ||| || || || || | || || || ||||| ||||| || Sbjct 91706 GAAAGTTGTGCCTGTGGTGTACCAGCTGCGAAAAGGGTGGGGGAGGCGTGGGTGAAGTAT 91765 Query 70033 TTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCC-CACTGATGAATTCC 70091 || || | || ||||| || || || || | || |||||| ||| | || ||||| Sbjct 91766 TTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCG-TGTATTCC 91824 Query 70092 TATCGCGACACGCATCAACATATGCTGAGGTCGTTC 70127 | ||| |||||||| | |||||| || || || || Sbjct 91825 CACCGCAACACGCATAATCATATGTTGTGGACGCTC 91860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686904257815560