Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq301 118 8e-22 >seq301 Length=444822 Score = 118 bits (130), Expect = 8e-22 Identities = 343/528 (65%), Gaps = 15/528 (3%) Strand=Plus/Minus Query 19234 GACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTG 19293 || ||| |||||| |||||| || || || || || || || ||||| || | Sbjct 7097 GATATGGGAATTGGTGGATTGGATACTGAATTCAGTGCTATTTTCCGAAGAGCGTTCGCA 7038 Query 19294 TCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTT 19353 || ||| |||| || | | | ||| | ||||||| | | ||||| || || Sbjct 7037 TCTCGTATTTTCCCTCCTGGATTGATTGAGAAATTGGGTATTCAGCATGTGAAGGGTATT 6978 Query 19354 TTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAA--- 19410 || |||| ||| || || ||| || ||||| || ||||| | || | | || Sbjct 6977 TTACTTTTTGGACCTCCAGGTACCGGGAAAACTTTGATTGCTCGTCAAATCGGAAAGATG 6918 Query 19411 TTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTA 19470 ||| | | | | |||| || || | || ||||| ||| |||||||||||||||| Sbjct 6917 TTAAATTCGAGAGAACCA---AAGGTTATCAACGGTCCAGAAGTCTTAAATAAATATGTT 6861 Query 19471 GGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGT 19530 || ||||| ||||| || | ||| | ||||| || || || |||| | || Sbjct 6860 GGACAATCTGAAGAGAACATCCGAAAACTCTTTGCGGATGCAGAGAAAGAGTACAAGGAG 6801 Query 19531 TTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAG 19590 ||| | ||| | | || ||||| || | ||||| ||||| || |||| || Sbjct 6800 AAAGGAGATGAGAGTGGTCTTCATATTATCATTTTTGATGAGTTGGATGCCGTCTGCAAA 6741 Query 19591 CAAAGAGGTTC---------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTC 19641 || ||||| ||||| || ||| || ||||| ||||||||||||||| Sbjct 6740 CAGAGAGGAAGCGGAGCCGGTGGTGGAACTGGTGTTGGTGACAGTGTTGTCAATCAACTT 6681 Query 19642 CTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAAT 19701 || || ||| | || |||||| | || || || ||||||||| | ||||| ||||| ||| Sbjct 6680 CTCTCCAAACTTGATGGTGTTGATCAGCTCAACAATATTTTACTCATTGGAATGACCAAT 6621 Query 19702 AGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAA 19749 | |||| | || || || ||| | || || || || |||||| Sbjct 6620 CGTATGGATATGATTGATGATGCTTTACTGCGTCCTGGACGTTTGGAA 6573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397453437526645