Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq400 95.1 1e-14 >seq400 Length=416305 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | ||||| || ||||| |||||||||||| || | | || | || || Sbjct 399764 ACCAAATGAAGTGTAGACTCCTTTTGGATATTGTAGTCGGACAAGGTTCGGCCATCCTCC 399705 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | || || || ||| ||||||| |||||||| || || || | |||||| ||||| Sbjct 399704 AATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCCTGA 399645 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | || | ||| || | | || || || ||||| || | || Sbjct 399644 ATCTTCGACTTCACATTATCGATAGTATCCGATGACTCCACCTCGAGAGTGATGGTCTTC 399585 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || || |||||||||||| Sbjct 399584 CCGGTGAGGGTCTTGACGAAGATTTGCATA 399555 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/233 (69%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 27017 ATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGT 27075 |||| ||||| || | || | ||||| || || || || |||||||| ||||| | Sbjct 400015 ATTGTCCTCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGAATGTTGTAAT 399956 Query 27076 CGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCG 27135 |||| | | || | || || | || || |||||| |||| | ||||||||||| | Sbjct 399955 CGCTGAGTGTACGACCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTG 399896 Query 27136 GCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTT 27195 | || | |||||| ||||| |||||| || | | || | ||||||| | | Sbjct 399895 GTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCTGAAGACT 399836 Query 27196 CAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||||| | || |||| |||||||||| || || |||||||| |||||| Sbjct 399835 CCACTTCCAATGTAATAGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATA 399783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424931660368248