Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq76 264 1e-65 seq101 129 7e-25 seq79 123 3e-23 seq34 82.4 1e-10 >seq76 Length=131010 Score = 264 bits (292), Expect = 1e-65 Identities = 1170/1816 (64%), Gaps = 55/1816 (3%) Strand=Plus/Plus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTAC-ATATGCATAGAAGA 110421 |||||||||||||| || |||||||| || ||||| || | | | ||||||| | Sbjct 90131 CGGAGATAGTACATTCCAGTCTTGAGACCCAACTTCCA-GCCTGCGAAATGCATACTGGT 90189 Query 110422 GAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAA 110481 || ||| ||| ||||| | |||| || |||||| |||| ||| |||||||| Sbjct 90190 GATCTTACCCATGGTTGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAA 90249 Query 110482 -GCGCCCCCGTTGTGCCGCCATATCAATGACA-TCCTTCATCTTA-ATTTCCCAAACTGT 110538 || || | || | || ||||| | | || | | | | | | || |||||||| || Sbjct 90250 TGCACCACGGTCG-GCAGCCATCTGGACGATGGTACGT--TGTGAGATCTCCCAAACGGT 90306 Query 110539 GCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGC 110598 || ||| |||||||||| ||||||| | || | ||| ||||| || || || Sbjct 90307 CTTGTAAAGAGCCTTGATATCAGCTGGGATGTTTGGAACATTTTGGATTGATCCACCA-- 90364 Query 110599 CTTCACCA-TGAGA---TCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCAT 110654 ||| || ||| | | |||||| | | |||||| || || || | ||| || | Sbjct 90365 --TCAGCAATGATACGGTTCTTCATGTTGTCGGACCAAAGTCCCATATCGACGAGATCCT 90422 Query 110655 TGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGT 110714 ||| || |||||||| || || || || ||| | || |||||||| Sbjct 90423 TGAGAAGCCATGGGTTGACAACTTGGAATTCTCCAGCAAGGACACGTCGAGAGTAGATGT 90482 Query 110715 TTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTGGAGGCTGTT 110773 | | || ||||| || ||||| || || | |||||| |||| ||| ||||||| Sbjct 90483 TGGAGGTATATGGCTCGAAGCACTCGTTGA-ATCCAAGAATTTGACTGGTACTGGCTGTT 90541 Query 110774 GGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGA 110833 ||||| || || | | | ||||||||| | ||| | | ||| ||| ||| | Sbjct 90542 GGCATAGGAGCGACGAGCAAACTGTTACGGATACCGTGTTGAGCGATCTGTTGCTTCAAG 90601 Query 110834 ACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCC 110891 | |||| || | || | | ||| | || ||||||||||| | || ||| | | Sbjct 90602 CTAGCCCAATCCCAAA-GATCGGTAGGTGTGACAC-CCCACATGTCATATTGGAGCTCGC 90659 Query 110892 CTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCAC 110951 | | || || || || || | | | || ||||| | ||| || | ||||| || Sbjct 90660 CCTTAGAGGCAGGCGAGCCTTGATATGTCTCATATGGACCATGAATCTTTGCCAACTCCA 90719 Query 110952 AGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGG 111011 | || || | ||||| || ||||| || || || || || | | ||||| Sbjct 90720 TGGAAGCAGTCAAAGCAGCGTGGTAAATGGTCTCGAAAATTTGAATGTTAAGGTGCTTGG 90779 Query 111012 CTTCATCTGAATCAAATGCGTAGCGGCACAAAATA-AATACATCCGCGAGACCTTGAACA 111070 | || || ||||| | | || | | | | || |||| || |||||||||||| Sbjct 90780 CCTCTGGAGACTCAAAAG-GAAGACGAAGAGCCAAGAAGGCATCAGCAAGACCTTGAACA 90838 Query 111071 CCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAA 111127 || | | ||||||||||||| || | ||| ||||| || |||| || || || Sbjct 90839 CCGAGAGCAATAGGTCTGTGACGGAAATTGCTCTTTCTTGC---CTCAGGAACTGGGTAG 90895 Query 111128 AAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT-GATTTCATGAAG 111186 | || || || | ||| | || ||| |||| ||| | || || ||||| Sbjct 90896 TAGTTGACATCGATAATCTTGTTCAAGTTCTTGACGACAA-CTTGGCAGACCTCGTGAAG 90954 Query 111187 TTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGC 111246 || | ||||| ||||| ||||| || | |||||| |||| || || | || || Sbjct 90955 CTTCTGGAAATCATAAGTGGCAGTCTTCTCGTCGACATATGTTGGGAGAGCAAGCGACGC 91014 Query 111247 CAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTT 111306 |||||||||| ||| |||||| | |||||| | ||| || || || ||||| Sbjct 91015 CAAATTGCAACAAGCGACCTCATCTGGTGCACAGTACTCGACAATCTCAGTGCACAAGTT 91074 Query 111307 GGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTA 111366 ||| || || || || | |||||||||||| ||||| |||||| ||||||||||| Sbjct 91075 GGAGCTTCGGATGGTACCGAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTA 91134 Query 111367 GAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGC 111426 |||||| | || | || ||||| || || | | ||||||| | ||||| | Sbjct 91135 AAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCAAGAATAGAGTACCAAAGCTTTTG 91194 Query 111427 GGC--TGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTC 111483 ||| || | | | || | ||| | ||||| | |||||| || || | ||||| Sbjct 91195 GGCTTTGATGCTCTTGC---GACCCTTGCCCTCAGACTCGTATTTCTCATACAACGCTTC 91251 Query 111484 AAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA 111543 ||||| ||||| | |||| | ||| || || || || || | | | ||| Sbjct 91252 GAACTCGTCACCGTAGACATCGGCCAAACCAGGACACTCGTTAGGGCACATCAATGTCCA 91311 Query 111544 -TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGA 111602 | || ||| ||||| ||||||||||| || ||||||||||| || | |||||| Sbjct 91312 GTCGAGGTTCTT-TTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGTAAAAGA 91370 Query 111603 GATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGA 111662 |||| | ||| |||| || | || ||||| ||| | || |||||||| | | Sbjct 91371 GATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAA 91430 Query 111663 TATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAG 111716 ||| ||||||||||||||||| |||| |||| || || ||||| ||| Sbjct 91431 CATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACC---AGGACGCTTGTTACCAC 91487 Query 111717 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 111776 |||||| ||||| | || ||| |||||| || | ||||| |||| || || | | Sbjct 91488 CTTGATCAACATATCTGGCGGTGTTGTTAAAAACTCTGAGCATAGGAACGATTCCGTTGG 91547 Query 111777 ATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCC 111836 | | || || || || |||| || | | || | | || | || | | Sbjct 91548 AGTTTCCGTTGGTACCGGCAATATAAGCACCAGTAGCACGGATTCTGTGAACGTTGAGAC 91607 Query 111837 CAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGT 111896 | ||||| ||||| |||||| || ||||| | | | || | || ||||| | Sbjct 91608 CGATACCACCAGCGTTCTTTGAAATCATAGCACAAATCTTCAATGTGTCGTAAATACCAT 91667 Query 111897 TGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTAC 111956 || ||||||||| || |||| |||||||| || | || | |||||||| Sbjct 91668 CAATGCTGTCCTCCTTCATGTCGATCAGGAAGCAGGATGAAAGTTGTGCCTGTGGTGTAC 91727 Query 111957 CAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTA 112014 |||| ||| ||||| || | ||||| |||| || ||| ||||||| || ||| Sbjct 91728 CAGCTGCGAAAAGGGTGGGGGAGGCGTGGGTGAA-GTA-TTTGCTGGACATCAAGTTGTA 91785 Query 112015 TGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACAT 112074 ||||| | | ||| || || || || ||||| || || | || || ||||| | ||| Sbjct 91786 GGTCTCGATGGCAGCCTCGATATCCTCACCGTGTATTCCCACCGCAACACGCATAATCAT 91845 Query 112075 GTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGG 112133 | ||||| || || |||||||||| || | ||||| | || ||| |||| Sbjct 91846 ATGTTGTGGACGCTCGCAGATCTTGCCATCGAGACGGAGGAGATATGATC-GCTCGAGGG 91904 Query 112134 TTTTGAGACCAAAGTA 112149 | |||| ||| ||||| Sbjct 91905 TCTTGAAACCGAAGTA 91920 >seq101 Length=586485 Score = 129 bits (142), Expect = 7e-25 Identities = 337/508 (66%), Gaps = 12/508 (2%) Strand=Plus/Minus Query 122378 CGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAA 122437 |||| ||||| ||||||||||||||||| || |||| ||||| ||||||||||| | Sbjct 138401 CGACACGCTTTTCAAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTCTCCATAAAGTCGA 138342 Query 122438 ATGGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGACGATCCGAC 122496 |||| || | | || ||| | || || | |||||||||||| | Sbjct 138341 ATGGGTTGGTAACCTTGTAAACCT-TCTCATTGCCGAGGGAAAGGAGGAGACGATCAGCG 138283 Query 122497 ACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGT 122556 || |||||||||| | |||| | | |||||| |||| || ||| || || Sbjct 138282 ACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAGAGCACAAGGAAGA 138223 Query 122557 GCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTT 122616 || || | |||| ||| |||||||||||| ||||| | | || ||| |||| | | Sbjct 138222 GCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACGGCCTGGACTGCT 138163 Query 122617 TCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCA----AACTCCTGGTG 122672 | | | || | || ||| |||||| | |||| || || ||| Sbjct 138162 GCCTTGCTTGGGCGATGCTTCAAGTGGGAGAAGAG----AAGGCATGCGAAGTCAGTGTG 138107 Query 122673 GAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCG 122732 |||||||| || ||||| || | || || |||||| ||||| | |||||| || || Sbjct 138106 CAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACG 138047 Query 122733 CTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGC 122792 |||||||||||| | || | | ||| || || ||||||||||||||| ||| || Sbjct 138046 CTTCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATACCCTCAACAGCGGC 137987 Query 122793 AAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCATTTCATTGCCC 122851 || |||| ||| |||| ||| |||| | || | ||| | | | |||| | |||| Sbjct 137986 GAAGGCAACAAGACGTTGGGCAAAGGTG-GACTCCTTGTCTTGGATCCATCGGACAGCCC 137928 Query 122852 ATTTCGCCTTCTTCTCAATACATGGTAC 122879 | | |||||||||| || || || || Sbjct 137927 AGTCGGCCTTCTTCTTGATGCAAGGAAC 137900 >seq79 Length=601583 Score = 123 bits (136), Expect = 3e-23 Identities = 164/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 || || || ||||||||||||| |||||| || ||| | | ||| || |||||||| Sbjct 306268 GCGTCGATTTCATCAATGAAGATAATACAAGGGGTATTCTTTCTGGCCATAGCAAAGAGA 306209 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG-CA 11748 || ||||| || ||||| |||||||||||||| |||||||| | | || | || Sbjct 306208 TCTCGAACTCTGGAAGCACCAACACCAACAAACATTTCCACAAACTCGGAACCACTGACA 306149 Query 11749 CTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGT 11808 || || ||| || ||| |||||| || || ||||| ||| || | ||||| || || Sbjct 306148 CT-GAAGAAAGGTACACCTGATTCTCCGGCAGTGGCTTTGGCTAGTAAAGTCTTACCAGT 306090 Query 11809 ACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 ||| || ||| | ||||| || ||||| |||||||| ||||| Sbjct 306089 ACCAGGTGGACCAGAGAGAATAGCTCCTCGAGGGATCTTAGCACC 306045 >seq34 Length=176468 Score = 82.4 bits (90), Expect = 1e-10 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 164657 TGGTGCGGGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCA 164716 ||| || ||||| |||||| ||||||| || ||||||||||| | ||||| ||||| Sbjct 143208 TGGCGCAGGTGTAATTGATGCCGACTACCGTGGCCAAGTCAAAGTCCTCCTCTTTAATCA 143149 Query 164717 CGGAGACAAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAG 164774 ||| || ||||| || ||||| ||| | || ||||| | || ||| | ||| | ||| Sbjct 143148 CGGCGAGAAAGATTTCGAGGTCAAGGAGGGAGATCGTGTAGCTCAATTGGTCTTGGAG 143091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628027847138400