Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq76 239 6e-58 seq101 136 5e-27 >seq76 Length=131010 Score = 239 bits (264), Expect = 6e-58 Identities = 1137/1781 (64%), Gaps = 53/1781 (3%) Strand=Plus/Plus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 |||| ||||||||| || ||| | | ||||| |||||||| || |||||||| | Sbjct 90099 TGAATTGAATGGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGAC 90158 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 || ||||||| | | |||||| || | ||| | |||||| | |||| Sbjct 90159 CCAACTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTCATGT 90218 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 || |||||| ||| |||||||| ||||| || || || || ||||| | | | Sbjct 90219 GGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGACGA 90278 Query 117985 CATCCTTCATCTTGA--TTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGAT 118042 | | | | ||| | ||||| || ||| |||| || ||| |||||| ||||||| Sbjct 90279 --TGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGGAT 90336 Query 118043 ATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGA 118102 | | ||||||||| |||||||| | | || | | |||||| | | || Sbjct 90337 GTTTGGAACATTTTGGATTGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCGGA 90396 Query 118103 CCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAACTCA 118160 ||| || || || | |||||||| | || ||| | ||||||| || || Sbjct 90397 CCAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGGGT--TGACAACTTGGAATTCT 90454 Query 118161 CCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTT 118219 || || ||| |||| ||| ||||| |||| || |||||||| |||||||| ||| Sbjct 90455 CCAGCAAGGACACGTCG-AGAGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTGA- 90512 Query 118220 ACCCAAGATTTGGGCTG-TGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGA 118278 | |||||| || | ||| | |||||| ||||| || || | ||| | |||||||||| Sbjct 90513 ATCCAAGAATTTGACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGGA 90572 Query 118279 GACCCTTTTCCCTAATGCGTTCCTTGAG---AGCG---TCCCAGTCGTAGTTGAGCTTTG 118332 ||| | || || ||| ||| | ||| ||||| | | | || | || Sbjct 90573 TACCGTGTTGAGCGATCTGTTGCTTCAAGCTAGCCCAATCCCAAAGATCGGT-AGGTGTG 90631 Query 118333 TCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATG 118392 | |||| |||| ||| | ||||| || | || || ||||| || | | ||| Sbjct 90632 ACACCCC-----ACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCCTTGATATG 90686 Query 118393 TCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACA 118452 |||||||||| || | || || ||||| || | || | || ||||| || | Sbjct 90687 TCTCATATGGACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGGTAAA 90746 Query 118453 TTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCG-- 118510 | || || ||||| || || | ||||||||| || ||||| | || || Sbjct 90747 TGGTCTCGAAAATTTGAATGTTAAGGTGCTTGGCCTCTGGAGACTCAAAAGGAAGACGAA 90806 Query 118511 GCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 118570 | | || || |||| || |||||||| |||||||| |||| || | || | | Sbjct 90807 GAGCCAAG--AAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAA 90864 Query 118571 ATTAGACTTCCGAGCGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAG 118627 ||| ||| | || ||| || || || | || |||||||| | | || | Sbjct 90865 ATTGCTCTTTCTTGC---CTCAGGAACTGGGTAGTAGTTGACATCGATAATCTTGTTCAA 90921 Query 118628 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 118687 || ||| |||||| | || || |||||||| | | ||||| || || ||||| Sbjct 90922 GTTCTTGACGACAACTTGGCAGACCTCGTGAAGCTTCTGGAAATCATAAGTGGCAGTCTT 90981 Query 118688 TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 118747 || | |||||| | || || || | ||||||| ||| || || | |||||| Sbjct 90982 CTCGTCGACATATGTTGGGAGAGCAAGCGACGCCAAATTGCAACAAGCGACCTCATCTGG 91041 Query 118748 ATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTT 118807 || |||||| | ||| || ||||||||||| || || ||||| || | ||||| Sbjct 91042 TGCACAGTACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTT 91101 Query 118808 TTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGT 118867 ||| || |||| ||| || |||||||||||||||||| | || | || ||||| || Sbjct 91102 TTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGT 91161 Query 118868 TTGGGACTTGAGAATAGCCTTCC--AGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGC 118925 ||| | || ||||||| | || || | || || | | ||| || | Sbjct 91162 TTGAGCCTCAAGAATAGAGTACCAAAGCTTTTGGGCTTTGATGCTCTTGCG-ACCCTTG- 91219 Query 118926 CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGC 118985 ||||| |||||| || || | ||||| ||||| ||||| | | || | | Sbjct 91220 CCCTCAGACTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAA 91279 Query 118986 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 119045 || || || | ||||| | | | ||| | || ||||| ||||||||| Sbjct 91280 CCAGGACACTCGTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATG 91339 Query 119046 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 119105 ||||| ||||| |||||||| || | |||||||| || ||| | || || | || Sbjct 91340 AAGAGATCTGGAATCCAGAGAGCGTAAAAGAGATCACGGGCACGAACCTCCTCCTTTCCG 91399 Query 119106 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 119165 || || || | || | || || | | ||| |||||||| || || ||||| | Sbjct 91400 TGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATG 91459 Query 119166 GCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTA 119219 |||| | || | |||| |||| | || | ||||| || || ||| |||| Sbjct 91460 GCGAAAGCACC---AGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTA 91516 Query 119220 AATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGAC 119279 || || | ||||| |||| ||| || | ||| | || || || || |||| || Sbjct 91517 AAAACTCTGAGCATAGGAACGATTCCGTTGGAGTTTCCGTTGGTACCGGCAATATAAGCA 91576 Query 119280 TTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGC 119339 | | || | || ||| | || | ||| ||||| || || |||||| || Sbjct 91577 CCAGTAGCACGGATTCTGTGAACGTTGAGACCGATACCACCAGCGTTCTTTGAAATCATA 91636 Query 119340 GCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGG 119399 || || | | | || |||| || ||||| || ||| |||| | |||| ||| Sbjct 91637 GCACAAATCTTCAATGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATCAGG 91696 Query 119400 AAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTG 119458 |||||| || | ||| ||||| ||||||||||| ||| || || || | ||||| Sbjct 91697 AAGCAGGATGAAAGTTG-TGCCTGTGGTGTACCAGCTGCGAAAAGGGTGGGGGAGGCGTG 91755 Query 119459 GATGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCC 119516 | |||| || ||| ||||||| || ||||||||| | | | || || || || Sbjct 91756 GGTGAA-GTA-TTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCA 91813 Query 119517 CCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557 ||||| || || | || || ||||||| ||| | ||| || Sbjct 91814 CCGTGTATTCCCACCGCAACACGCATAATCATATGTTGTGG 91854 >seq101 Length=586485 Score = 136 bits (150), Expect = 5e-27 Identities = 302/446 (68%), Gaps = 14/446 (3%) Strand=Plus/Minus Query 129737 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAAT 129796 || ||||| || |||||||| ||||| ||| | | ||| ||||||||||| || ||| Sbjct 138399 ACACGCTTTTCAAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTCTCCATAAAGTCGAAT 138340 Query 129797 GGGTTCTTTGAGTTCCAAAT-TGCTGGCACT-CCAATCTGTTTGAGGAGACGATCCGAGA 129854 ||||| | || ||| | || || | || | |||||||||||| | || Sbjct 138339 GGGTTGGTAACCTTGTAAACCTTCT--CATTGCCGAGGGAAAGGAGGAGACGATCAGCGA 138282 Query 129855 CGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACATGGGAGCG 129914 || |||||||||| | |||| | || |||||| |||| || ||| || || | Sbjct 138281 CGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAGAGCACAAGGAAGAG 138222 Query 129915 CGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATGGTCT 129974 | || | |||| | | |||||| || ||||| || | || ||| || | | Sbjct 138221 CCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACGGCCTGGACTGCTG 138162 Query 129975 CCGTGCCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTCCACGGCA----AACTCCTGGTG 130029 || ||| || | || || |||| |||||| | |||| || || ||| Sbjct 138161 CCTTGCTTGGGCGAT-GCTTCAAGTGGGAGAAGAG----AAGGCATGCGAAGTCAGTGTG 138107 Query 130030 GAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCG 130089 |||||||||||||||||||| | || || |||||| ||||| | |||||| || || Sbjct 138106 CAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACG 138047 Query 130090 CTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGC 130149 ||||||||||||||| || | || |||||| ||||||||| ||||| ||| || Sbjct 138046 CTTCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATACCCTCAACAGCGGC 137987 Query 130150 GAACGCAAAGAGACGCTCAGCAAAGG 130175 ||| |||| ||||| | ||||||| Sbjct 137986 GAAGGCAACAAGACGTTGGGCAAAGG 137961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618431110597240