Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq76 273 3e-68 seq101 102 1e-16 seq79 86.0 7e-12 >seq76 Length=131010 Score = 273 bits (302), Expect = 3e-68 Identities = 1141/1764 (65%), Gaps = 65/1764 (4%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||| | ||| | ||||| || || | || || || || || || || || ||| | Sbjct 91854 CCACAACATATGATTATGCGTGTTGCGGTGGGAATACACGGTGAGGATATCGAGGCTGCC 91795 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | ||||| ||| || ||||||| ||| || |||| ||||| | || ||||| | Sbjct 91794 ATCGAGACCTACAACTTGATGTCCAGCAAA-TAC-TTCACCCACGCCTCCCCCACCCTTT 91737 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 || |||||||||||| | ||| | || |||||||| |||| || ||||||| Sbjct 91736 TCGCAGCTGGTACACCACAGGCACAACTTTCATCCTGCTTCCTGATCGACATGAAGGAGG 91677 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || || | ||||| || | || | | | ||||| || |||||| |||| Sbjct 91676 ACAGCATTGATGGTATTTACGACACATTGAAGATTTGTGCTATGATTTCAAAGAACGCTG 91617 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | ||||| || | || | || | | || | | || |||| || || | Sbjct 91616 GTGGTATCGGTCTCAACGTTCACAGAATCCGTGCTACTGGTGCTTATATTGCCGGTACCA 91557 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || | || | || || |||| ||||| | || |||||| ||| || | |||| Sbjct 91556 ACGGAAACTCCAACGGAATCGTTCCTATGCTCAGAGTTTTTAACAACACCGCCAGATATG 91497 Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | |||||| ||| ||||| || || |||| |||| ||||||||||||| Sbjct 91496 TTGATCAAGGTGGTAACAAGCGTCCT---GGTGCTTTCGCCATCTACCTTGAGCCATGGC 91440 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| ||| | | |||||||| || | || ||||| || | ||||||| || Sbjct 91439 ACGCCGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCACGGAAAGGAGGAGGTTCGTG 91380 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 ||| |||||||| | ||||||||||||||||||||||||||||||| | ||||| ||| Sbjct 91379 CCCGTGATCTCTTTTACGCTCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGA 91320 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813 | | ||| | | | || || || || |||||| | |||||| | |||| Sbjct 91319 ACCTCGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGCCGATGTCTACGGTG 91260 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACGGT 104871 | ||||| ||||| | || || |||||| | ||| | | | | || || | Sbjct 91259 ACGAGTTCGAAGCGTTGTATGAGAAATACGAGTCTG-AGGGCAAGGGTC-GCAAGAGCAT 91202 Query 104872 GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931 ||| | | ||| | ||||||| || ||||||| ||||| || | || | Sbjct 91201 CAAAGCCCAAAAGCTTTGGTACTCTATTCTTGAGGCTCAAACTGAGACCGGAAACCCTTT 91142 Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991 |||||||||||| || || || |||| |||||| || ||||||||| | ||| ||| Sbjct 91141 CATGCTTTACAAGGATGCTTGCAACCGAAAGAGCAACCAAAAGAATCTCGGTACCATCCG 91082 Query 104992 GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AAGATGAGACGGCTGTG 105049 || ||||| | || || || || | || ||| | || ||||||| ||| Sbjct 91081 AAGCTCCAACTTGTGCACTGAGATTGTCGA--GTACTGTGCACCAGATGAGGTCGCTTGT 91024 Query 105050 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAG-AGACAAAGACATTTGA 105108 || || | || || | |||||||| | ||||| || | || |||| || | ||| Sbjct 91023 TGCAATTTGGCGTCGCTTGCTCTCCCAACATATGTCGA-CGAGAAGACTGCCACTTATGA 90965 Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 || | || || ||||| || || |||| ||| ||| | |||| |||| || Sbjct 90964 TTTCCAGAAGCTTCACGAGGTCTGCCAAGTTGTCGTCAAGAACTTGAACAAGATTATCGA 90905 Query 105169 TAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 105225 | || | ||||| || |||| || | || ||| | | ||| | || || Sbjct 90904 TGTCAACTACTACCCAGTTCCTGAG---GCAAGAAAGAGCAATTTCCGTCACAGACCTAT 90848 Query 105226 TGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTGA 105282 || |||||||||||| ||||| || |||| ||| | |||| ||| | | ||||| Sbjct 90847 TGCTCTCGGTGTTCAAGGTCTTGCTGATGCCTTCTTGGCTCTTCGTCTTC---CTTTTGA 90791 Query 105283 TTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCT 105342 || || || ||| | | || | || || |||||||| || ||||| ||| | Sbjct 90790 GTCTCCAGAGGCCAAGCACCTTAACATTCAAATTTTCGAGACCATTTACCACGCTGCT-T 90732 Query 105343 TGAGGCGAGTTCA--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 105400 ||| | | || ||||||||| || || ||||||||||||| || | | | || || Sbjct 90731 TGA-CTGCTTCCATGGAGTTGGCAAAGATTCATGGTCCATATGAGACATATCAAGGCTCG 90673 Query 105401 CCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTA 105459 || || || | || | ||| |||| ||| ||||||| || | ||| | | || | Sbjct 90672 CCTGCCTCTAAGGGCGAGCTCCAATATGACATGTGGG-GTGTCACACCTACCGATCTTTG 90614 Query 105460 CGACTGGG-AAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCA 105518 || |||| |||| | ||| ||| ||| | | ||| | ||||||||| | ||| Sbjct 90613 GGATTGGGCTAGCT-TGAAGCAACAGATCGCTCAACACGGTATCCGTAACAGTTTGCTCG 90555 Query 105519 TGGCTCCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAATGAATGCTTTGAA 105577 | ||||| |||||||||||| ||| |||| |||||| | || || ||||| || Sbjct 90554 TCGCTCCTATGCCAACAGCCAGTACCAGTCAAATTCTTGGAT-TCAACGAGTGCTTCGAG 90496 Query 105578 CCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA 105636 || || || | |||||||| ||| || | ||| || ||||| || ||||||| Sbjct 90495 CCATATACCTCCAACATCTACTCT-CGACGTGTCCTTGCTGGAGAATTCCAAGTTGTCAA 90437 Query 105637 C---AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA 105693 | || |||| |||| ||| || || || || |||||| | | |||||| | Sbjct 90436 CCCATGGCTTCTCAAGGAT---CTCGTCGATATGGGACTTTGGTCCGACAACATGAAGAA 90380 Query 105694 ---TCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAA 105749 | ||| || ||| ||||| || || |||||| || | || ||| ||| | Sbjct 90379 CCGTATCATTGCTGA----TGGTGGATCAATCCAAAATGTTCCAAACATCCCAGCTGATA 90324 Query 105750 TTAAGAAGTTGTACCGCACAGTTTGGGAAA--TCAAGATGAAGGATGTCATTGACATGGC 105807 | ||| | ||| || |||||||| | ||| | | | | || | | ||||| Sbjct 90323 TCAAGGCTCTTTACAAGACCGTTTGGGAGATCTCACAACGTACCA--TCGTCCAGATGGC 90266 Query 105808 CGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCC 105867 || || |||||| |||||||||||| |||| ||||| || |||| | || Sbjct 90265 TGCCGACCGTGGTGCATTCATTGATCAATCTCAATCAATGAACATCCACATGAAGGACCC 90206 Query 105868 AACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGG 105927 ||| ||| ||| || | |||||| | | |||||| ||||||||| || || Sbjct 90205 AACCATGGGTAAGATCACCAGTATGCATTTCGCAGGCTGGAAGTTGGGTCTCAAGACTGG 90146 Query 105928 GATGTATTACCTCCGATCTAAGGC 105951 ||||| || ||||| ||| ||| Sbjct 90145 AATGTACTATCTCCGTACTATGGC 90122 >seq101 Length=586485 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 ||||||| | || || | || || || ||||||||||||||||||| ||| || | Sbjct 137961 CCTTTGCCCAACGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGCTCTT 138020 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 || | | || | ||| | |||||||| || |||||| | ||||| ||||||||||| Sbjct 138021 TCGCCTCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACG 138080 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCAC 94944 || | ||||| ||||||||||| || ||| Sbjct 138081 AGTTGATCTCCCGTGACGAGGGTCTGCAC 138109 >seq79 Length=601583 Score = 86.0 bits (94), Expect = 7e-12 Identities = 210/315 (67%), Gaps = 14/315 (4%) Strand=Plus/Minus Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763 || || || ||||||||||||| || || || ||| | | || | |||||||| Sbjct 306268 GCGTCGATTTCATCAATGAAGATAATACAAGGGGTATTCTTTCTGGCCATAGCAAAGAGA 306209 Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA-CA 9822 || || || | || || |||||||||||||| |||||||| | ||||| || Sbjct 306208 TCTCGAACTCTGGAAGCACCAACACCAACAAACATTTCCACAAACT------CGGAACCA 306155 Query 9823 TTG-----GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877 || || ||| || ||| ||||| || ||| ||||| ||| || | ||||||| Sbjct 306154 CTGACACTGAAGAAAGGTACACCTGATTCTCCGGCAGTGGCTTTGGCTAGTAAAGTCTTA 306095 Query 9878 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAG 9937 || ||||| || ||| | ||| | || ||||| || ||||| || || || | Sbjct 306094 CCAGTACCAGGTGGACCAGAGAGAATAGCTCCTCGAGGGATCTTAGCACCCAATCTCTCG 306035 Query 9938 TATCTCTCAGGTTGCTTAAGAAAATCCAC-AATTTCTTCCAATTCATCTTTGGCGGCGTC 9996 || ||||||| ||| | ||| || |||| | | | |||| ||||| |||| Sbjct 306034 AATTGCTCAGGTGTCTTTAAAAATGAAACGAATTCCATAATCTCCATC-TTGGCTTCGTC 305976 Query 9997 AATCCCCTCAACATC 10011 || ||| ||||||| Sbjct 305975 CATACCCGCAACATC 305961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583256943187960