Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2 201 3e-46 seq223 143 8e-29 seq400 141 3e-28 seq112 104 7e-17 >seq2 Length=651517 Score = 201 bits (222), Expect = 3e-46 Identities = 490/738 (66%), Gaps = 12/738 (2%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || ||||| |||||| | || || || || || ||||| | | | | | ||||||| Sbjct 502143 GCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTGGGTATCTATCGTGATGATCGA 502202 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 | || || || || || || || || ||| |||| || || || | |||||| || || Sbjct 502203 ATTGAGATTATCGCCAACGACCAGGGAAACCGAACCACCCCTTCCTTCGTTGCCTTCACA 502262 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || |||||| |||| || ||| | ||||| || |||| ||| || || || Sbjct 502263 GATACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAAGTTGCCATGAACCCCGCCAAC 502322 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACACA 349434 || || ||||| || ||||| || || || | | || | ||| || || || Sbjct 502323 ACAGTCTTTGACGCAAAGCGTCTGATCGGACGCAAGTTCGCAGACCAGGAAGTC----CA 502378 Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494 ||||| | || || ||||| || || || | | | | |||| || || | | Sbjct 502379 GGCTGATATGAAGCACTTTCCCTTCACCGTCCT--CGACCGT-GGTGGAAAGCCTGTCGT 502435 Query 349495 TGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGT 349554 ||| |||| | || || || | || ||||| ||| || ||||| || || ||| | Sbjct 502436 CGAGATTGAGTTCAAGGGCGAGAAGAAGCAATTCACACCAGAGGAAATCTCTTCCATGAT 502495 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 || || || |||| || | ||| || || || | |||| ||| || | | || || Sbjct 502496 CTTGGTCAAGATGAGAGAGACTGCCGAGGCGTACCTTGGTGGAACCGTCAACAACGCCGT 502555 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 | || || ||||| || |||| ||| | || ||| || || || || || || Sbjct 502556 CGTGACCGTCCCAGCATACTTTACCGATTCACAACGTCAAGCCACCAAGGACGCCGGTTT 502615 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 || || || | || ||||| |||| || || || || || ||||| || |||||||| Sbjct 502616 GATCGCTGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACCGCTGCCGCCATTGCATA 502675 Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 ||| || || || | | ||| || ||| |||| || |||||| | ||||| || Sbjct 502676 TGGTCTCGACAAGAAGGTTGAGGGTGAGCGAAACGTTCTCATCTTTGATCTTGGTGGAGG 502735 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 ||||| ||||| || || | || | || ||||| || |||||||| || | || || Sbjct 502736 AACTTTCGATGTCTCGCTCTTGACCATCGAGGAGGGTATCTTTGAAGTCAAGTCCACCGC 502795 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914 |||||||| || | ||||| || ||||| |||||||||||||| ||||| ||| Sbjct 502796 AGGTGATACGCACTTGGGTGGTGAGGATTTCGATAATCGTCTCGTCAATCATTTCGTTTC 502855 Query 349915 AGAATTTAAGCGTCAAGC 349932 || || || || ||||| Sbjct 502856 GGAGTTCAAACG-CAAGC 502872 >seq223 Length=893608 Score = 143 bits (158), Expect = 8e-29 Identities = 229/329 (70%), Gaps = 0/329 (0%) Strand=Plus/Minus Query 378120 ATCAAATCCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTGTTTCTTACAGT 378179 ||| || ||||| || ||||| |||||| ||||| | | |||| ||||| Sbjct 462004 ATCCAAACCATCCTCGCCATAGACGAATTGCACAATATCGCCGAGGGAATTTCGGACAGT 461945 Query 378180 CATATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACC 378239 ||||||| || | || | ||| || | ||| || | ||| || || ||||||||| Sbjct 461944 TCCATCATATTTAGCAATGACATCCTCAAGTGCCTTGACAAGACGACGTTGAATATAACC 461885 Query 378240 AGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAA 378299 ||||| | ||| || ||||| ||||| || | ||| |||||||| |||| || ||||| Sbjct 461884 AGTTTCAGCAGTCTTCACTGCGGTATCGATGAGACCTTCACGACCAGCCATGGCGTGGAA 461825 Query 378300 GAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCC 378359 || || || || || || | |||| || | |||| | |||| ||||||||||| | Sbjct 461824 AAAGAACTCGGTTGGTGTTAACCCACGAAGATATGAGTTTTCAACAAATCCTCTTGATTC 461765 Query 378360 TGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAAT 378419 ||| || | ||||| ||||| ||||||| | ||| || | | || || | ||||| Sbjct 461764 TGGGGAGTAATCATCCTTTGTGAAATGAGGAAGTGTTCGGTATTTGAATCCGAAAGGAAT 461705 Query 378420 TCGTTTTCCATCAACATTCTGTTGACCAA 378448 || ||||| || ||| || ||||||| Sbjct 461704 GCGCTTTCCTTCCACAGATTGCTGACCAA 461676 Score = 98.7 bits (108), Expect = 3e-15 Identities = 116/154 (75%), Gaps = 5/154 (3%) Strand=Plus/Minus Query 377435 ATAATGATAATATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAA 377494 ||| ||| ||| || ||||| || || |||||| | || || ||| || || | | Sbjct 462708 ATATTGAGAAT-TTCCTTCAGA-CGAGGTACACCAAGGGTGACGTTC---TTCGAAGACA 462654 Query 377495 CACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCG 377554 |||| ||||| ||||||||||| || || | ||| || | ||| || ||||| || || | Sbjct 462653 CACCTGCAAAATGGAAAGTATTGAGCGTCATTTGCGTCGCGGGTTCTCCAATAGATTGAG 462594 Query 377555 CTGCAATAACGCCAACCATTTCTCCAGGATTGAC 377588 | |||| || ||||||||||||||||||||||| Sbjct 462593 CAGCAAGGACTCCAACCATTTCTCCAGGATTGAC 462560 >seq400 Length=416305 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | |||||| |||||||| ||||| ||||| || || Sbjct 399786 CATACCACCACGAAGACGAAGGACCAAATGAAGTGTAGACTCCTTTTGGATATTGTAGTC 399727 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || || ||||| ||||| || | ||| || || || || || || || || || ||||| Sbjct 399726 GGACAAGGTTCGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGG 399667 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || ||||||||||| || | || |||||||| || | ||| |||| || Sbjct 399666 TGGGATACCCTCCTTATCCTGAATCTTCGACTTCACATTATCGATAGTATCCGATGACTC 399607 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || || || ||||| Sbjct 399606 CACCTCGAGAGTGATGGTCTTCCCGGTGAGGGTCTTGACGAAGATTTGCAT 399556 Score = 127 bits (140), Expect = 6e-24 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | || ||||| | || |||||||| || || || || || | Sbjct 399562 TTTGCATACCACCACGGAGTCGGAGAACCAAGTGCAGAGTAGATTCCTTCTGGATGTTGT 399503 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || || |||||||| || ||||||||||| |||||||| || | Sbjct 399502 AGTCCGAAAGAGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGGT 399443 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || |||||||| || | || || || || || | ||| |||| Sbjct 399442 CCGGTGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATAGTATCCGATG 399383 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAA 140727 || || || || || | ||||| ||||| | || || |||| Sbjct 399382 ACTCCACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACAA 399338 Score = 123 bits (136), Expect = 8e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| ||||| | | || || | ||||| || ||||| || || || || | Sbjct 399277 TTTGCATACCGCCACGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGT 399218 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 ||||||| | || || ||||| || || || ||||| |||||||| | |||||| |||| Sbjct 399217 AATCAGACAGAGTACGTCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGTTGTTGAT 399158 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||||||||| || || ||||| || || | || || ||||| || | || || | Sbjct 399157 CTGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTATCGATGGTGTCGGAAG 399098 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 || || ||||| || | ||||| ||||| Sbjct 399097 ACTCCACCTCAAGGGTGATAGTCTTACCGGT 399067 Score = 104 bits (114), Expect = 7e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 140546 CTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605 ||| |||||||| || ||||| | ||| || ||||| || | ||| || || || || Sbjct 399975 CTCCTTTTGAATGTTGTAATCGCTGAGTGTACGACCATCCTCCAATTGCTTGCCGGCGAA 399916 Query 140606 GATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATT 140665 || | || || ||||| || ||||| || || |||||||| || || | || ||||| Sbjct 399915 AATCAATCGCTGTTGATCTGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATT 399856 Query 140666 ATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 |||||| | || || | || ||||| | ||||| ||||| || || | || || || Sbjct 399855 ATCAATTGTGTCTGAAGACTCCACTTCCAATGTAATAGTCTTGCCCGTCAAGGTCTTGAC 399796 Query 140726 AAAAATCTGCAT 140737 ||| |||||||| Sbjct 399795 AAAGATCTGCAT 399784 >seq112 Length=942636 Score = 104 bits (114), Expect = 7e-17 Identities = 190/278 (68%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || ||| ||||||| ||||||||||| || || |||| | ||||| || |||||| Sbjct 32358 GCAGTTGTTACTGTCCCAGCCTATTTCAACGACAACCAGAGACAAGCAACTAAGGATGCT 32299 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||| || || || || || | || | || || ||||| || ||||| || Sbjct 32298 GGTGTCATTGCTGGTTTGAACGTCCTCCGTATCGTCAACGAGCCCACCGCCGCAGCTATC 32239 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || |||||||| | || | | || | | | || || | | ||| | ||| Sbjct 32238 GCCTACGGTCTTGATAA---GGTTGGCAAGGAGAGACAAATCATTGTCTACGATCTCGGT 32182 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 || || || || ||||| || || || | | ||||| || |||| || ||| | Sbjct 32181 GGAGGAACCTTCGATGTTTCTCTCCTCTCTATCGAAGATGGTGTTTTCGAGGTTCTTTCT 32122 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 || |||||||| || ||| | ||||| || ||||| || Sbjct 32121 ACCGCTGGTGACACCCATTTGGGTGGTGAGGATTTCGA 32084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515244129889787