Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq76 210 2e-49 seq101 125 8e-24 >seq76 Length=131010 Score = 210 bits (232), Expect = 2e-49 Identities = 533/800 (67%), Gaps = 22/800 (3%) Strand=Plus/Plus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTT--GATGGTGCCGATGTTCTTCTGGTTG 79155 ||||| || || |||||||| || || ||| |||||| |||| ||||| |||||| Sbjct 91051 CTCGACAATCTCAGTGCACAAGTTGGAG--CTTCGGATGGTACCGAGATTCTTTTGGTTG 91108 Query 79156 CTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTC 79215 ||||| ||| || || |||||||| |||| | || | ||||||||| ||| | Sbjct 91109 CTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCC 91168 Query 79216 TTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGC- 79274 | |||| || ||| | | |||| || ||||| ||||||| ||| Sbjct 91169 TCAAGAATAGAGTACCAAAGCTTTTGGGCTTTGATGC---TCTTG---CGACCCT-TGCC 91221 Query 79275 ----GAC--GTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCC 79328 ||| ||| || |||||| | | ||| | || || |||||||||| || || Sbjct 91222 CTCAGACTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACC 91281 Query 79329 CGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAA 79388 || ||||||| |||||||||| |||||| || ||| ||||| || |||||| Sbjct 91282 AGGACACTCGTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAA 91341 Query 79389 GAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTG 79448 ||| || || ||||| || || ||||| || ||| ||| | |||||| | || || Sbjct 91342 GAGATCTGGAATCCAGAGAGCGTAAAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTG 91401 Query 79449 GTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGC 79508 |||| || || ||||| || || | | ||||||||||| ||||| || |||||||| Sbjct 91402 GTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGC 91461 Query 79509 GAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAAC 79568 ||| | ||| |||||| || || || | || || | ||| |||||||| ||||| Sbjct 91462 GAAAGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTAAAAAC 91521 Query 79569 TCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCT 79628 || |||||| || ||||| |||| || | ||||| || ||| || | ||| | Sbjct 91522 TCTGAGCATAGGAACGATTCCGTTGGAGTTTCCGTTGGTACCGGCAATATAAGCACCAGT 91581 Query 79629 CGC-CCGAATGTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGC 79687 || | || | | || | || || ||||| || || | ||| || || || | Sbjct 91582 AGCACGGATTCTGTGAAC-GTTGAGACCGATACCACCAGCGTTCTTTGAAATCATAGCAC 91640 Query 79688 ACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGC 79747 | ||| | || ||||| || || || || ||| |||||||| ||| |||||||| Sbjct 91641 AAATCTTCAATGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATCAGGAAGC 91700 Query 79748 AGCTCGACATCTGTGGGT-TGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTG 79806 || || | |||| | || | ||||| || ||| ||||| || | ||||| ||| Sbjct 91701 AGGATGAAAGTTGTGCCTGTGGT-GTACCAGCTGCGAAAAGGGTGGGGGAGGCGTGGGTG 91759 Query 79807 AAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGG 79866 ||| | || | ||||| | ||| ||||| || | | || || || ||||| Sbjct 91760 AAGTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCGTGT 91819 Query 79867 ATGCCGACCGCGACGCGCAT 79886 || || ||||| || ||||| Sbjct 91820 ATTCCCACCGCAACACGCAT 91839 Score = 188 bits (208), Expect = 8e-43 Identities = 408/603 (68%), Gaps = 8/603 (1%) Strand=Plus/Minus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177 ||||| || ||||| || || || || || || || | | | |||||| ||| || Sbjct 91839 ATGCGTGTTGCGGTGGGAATACACGGTGAGGATATCGAGGCTGCCATCGAGACCTACAAC 91780 Query 19178 CTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAA 19236 ||||| |||| || | |||||| ||||| | || ||||||||| || ||||| | Sbjct 91779 TTGATGT-CCAGCAAATACTTCACCCACGCCTCCCCCACCCTTTTCGCAGCTGGTAC--A 91723 Query 19237 CAACCCGCAGA--TGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGC 19294 | || ||| | | || ||| ||||| | | |||||||| ||||||||||| || Sbjct 91722 CCACAGGCACAACTTTCATCCTGCTTCCTGATCGACATGAAGGAGGACAGCATTGATGGT 91663 Query 19295 ATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATC 19354 || ||||| || | ||| || || || || ||| | || |||||||| || Sbjct 91662 ATTTACGACACATTGAAGATTTGTGCTATGATTTCAAAGAACGCTGGTGGTATCGGTCTC 91603 Query 19355 CACTGCTCGAATA-TCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGA 19413 || | || | | |||| | | |||| | || || || |||||| || | Sbjct 91602 AAC-GTTCACAGAATCCGTGCTACTGGTGCTTATATTGCCGGTACCAACGGAAACTCCAA 91544 Query 19414 CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGG 19473 ||| ||||| || |||||| | || || |||||||| ||||| || || | || || || Sbjct 91543 CGGAATCGTTCCTATGCTCAGAGTTTTTAACAACACCGCCAGATATGTTGATCAAGGTGG 91484 Query 19474 CGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGA 19533 ||| || || | |||||||||||||| |||||||||||||| || || | || Sbjct 91483 TAACAAGCGTCCTGGTGCTTTCGCCATCTACCTTGAGCCATGGCACGCCGATGTTTTCGA 91424 Query 19534 TTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCAC 19593 |||||||| || || |||||| || | |||||| | || || || ||||| Sbjct 91423 GTTCCTCGACCTCCGAAAGAACCACGGAAAGGAGGAGGTTCGTGCCCGTGATCTCTTTTA 91364 Query 19594 GGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCT 19653 || | |||||||| || || |||||| || ||||| ||| || || ||| | Sbjct 91363 CGCTCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAACCTCGACTGGACATT 91304 Query 19654 GATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTT 19713 ||||||||| |||| || ||||| | |||| |||||||| || | |||| | | ||| Sbjct 91303 GATGTGCCCTAACGAGTGTCCTGGTTTGGCCGATGTCTACGGTGACGAGTTCGAAGCGTT 91244 Query 19714 GTA 19716 ||| Sbjct 91243 GTA 91241 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || || | ||||||||| || |||||||||||| |||||| || | |||||||| Sbjct 90128 GTACGGAGATAGTACATTCCAGTCTTGAGACCCAACTTCCAGCCTGCGAAATGCATACTG 90187 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | | ||| ||| | |||| || |||| |||||| | || || || || || ||| Sbjct 90188 GTGATCTTACCCATGGTTGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATG 90247 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369 | ||||| |||||||| ||||| | || || | ||| | |||||||| | |||| Sbjct 90248 AATGCACCACGGTCGGCAGCCATCTGGACGATGGTACGTTGTGAGATCTCCCAAACGGTC 90307 Query 78370 CGGTAAATGGCCTT 78383 ||||| ||||| Sbjct 90308 TTGTAAAGAGCCTT 90321 >seq101 Length=586485 Score = 125 bits (138), Expect = 8e-24 Identities = 305/454 (67%), Gaps = 16/454 (4%) Strand=Plus/Plus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 ||||| |||||||| | || || || || || || ||||||||| |||||| ||| Sbjct 137963 TTTGCCCAACGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGCTCTTTC 138022 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 | || |||||| | || ||||||||||||||| | || || | |||||||||||| Sbjct 138023 GCCTCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAG 138082 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCTA 60152 |||| ||||| |||||||| || || || || ||| || | ||| ||| | || Sbjct 138083 TTGATCTCCCGTGACGAGGGTCTGCACACTGACTTCGCA-TG-CCTTCTCTTCTC-CCAC 138139 Query 60153 TTGGAAAAATGCCCTTCCAAGGATATTCACAAGATTGT--TCAGTG-GGCTTGTGAAGTG 60209 ||| | | |||| ||||| | || || ||| | |||| ||| | Sbjct 138140 TTGAAGCATCGCCCAAGCAAGGCAGCAGTCCAGGCCGTCATCACCGAGGCTGTTGAGATT 138199 Query 60210 GAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAA 60269 ||| |||||| | || || || ||||| || || | || ||| |||| Sbjct 138200 GAGCAAGAGTTCTTGACTGAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACGCCAACTTG 138259 Query 60270 ATGACGCAGTACATTCAGTTTGTCGCGGACCG---CCTCATGGCC--CAGTTTGGAGAAG 60324 |||| ||| |||||| |||| ||||| || || |||| | || | | |||||| Sbjct 138260 ATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTCCTCCTTTCCCTCGGCAATGAGAAG 138319 Query 60325 GACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGA 60384 | ||||| || | ||||| ||||||| ||||||| |||||| | | || | Sbjct 138320 G-----TTTACAAGGTTACCAACCCATTCGACTTTATGGAGAACATCTCTCTTGCCGGAA 138374 Query 60385 AGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||||||||| ||||| |||| ||||| Sbjct 138375 AGACCAACTTCTTTGAAAAGCGTGTCGCTGATTA 138408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548521172879760