Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq76 205 1e-47 seq482 107 2e-18 seq101 105 7e-18 >seq76 Length=131010 Score = 205 bits (226), Expect = 1e-47 Identities = 503/755 (67%), Gaps = 12/755 (2%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| || || |||| || |||||||| || | | || | ||||| ||| || Sbjct 91839 ATGCGTGTTGCGGTGGGAATACACGGTGAGGATATCGAGGCTGCCATCGAGACCTACAAC 91780 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 || ||| | || ||||| || |||||| | || ||||| ||| |||||||| Sbjct 91779 TTGATGTCCAGCAAATACTTCACCCACGCCTCCCCCACCCTTTTCGCAGCTGGTACACCA 91720 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 || | || | || |||||||||| | | |||||||| ||| || || || || Sbjct 91719 CAGGCACAACTTTCATCCTGCTTCCTGATCGACATGAAGGAGGACAGCATTGATGGTATT 91660 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434 ||||| || | ||| ||||| || || ||| | |||||||||||| || || Sbjct 91659 TACGACACATTGAAGATTTGTGCTATGATTTCAAAGAACGCTGGTGGTATCGGTCTCAAC 91600 Query 53435 -TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | | | ||| ||||||| | || | || || || ||||| | || | | Sbjct 91599 GTTCACAGAA--TCCGTGCTACTGGTGCTTATATTGCCGGTACCAACGGAAACTCCAACG 91542 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 ||||||| ||||||||| | || || |||||||| ||| | || || | || |||||| Sbjct 91541 GAATCGTTCCTATGCTCAGAGTTTTTAACAACACCGCCAGATATGTTGATCAAGGTGGTA 91482 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | |||||||||||||| ||||| ||||||||||| || | |||| Sbjct 91481 ACAAGCGTCCTGGTGCTTTCGCCATCTACCTTGAGCCATGGCACGCCGATGTTTTCGAGT 91422 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 | ||||| || || ||| || || | || ||| | || |||||| || ||| | Sbjct 91421 TCCTCGACCTCCGAAAGAACCACGGAAAGGAGGAGGTTCGTGCCCGTGATCTCTTTTACG 91362 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 |||| |||||||| || ||||||||| | || || ||| || || ||| ||| Sbjct 91361 CTCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAACCTCGACTGGACATTGA 91302 Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792 ||||||| |||||||| || || | | |||||||||||| ||||| | | | ||| Sbjct 91301 TGTGCCCTAACGAGTGTCCTGGTTTGGCCGATGTCTACGGTGACGAGTTCGAAGCGTTGT 91242 Query 53793 ATCGGACGTACGCAGT-TCAGGGC---CGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTA 53848 || || |||| ||| | ||||| | ||||| | |||| || | || | Sbjct 91241 ATGAGAAATACG-AGTCTGAGGGCAAGGGTCGCAAGAGCA---TCAAAGCCCAAAAGCTT 91186 Query 53849 TGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGAT 53908 ||| | | || || || || ||||| |||| || | |||| ||||||||| Sbjct 91185 TGGTACTCTATTCTTGAGGCTCAAACTGAGACCGGAAACCCTTTCATGCTTTACAAGGAT 91126 Query 53909 TCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 | |||| ||||||||||| ||||| |||| Sbjct 91125 GCTTGCAACCGAAAGAGCAACCAAAAGAATCTCGG 91091 >seq482 Length=372737 Score = 107 bits (118), Expect = 2e-18 Identities = 298/446 (67%), Gaps = 12/446 (3%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || ||||| || || || ||||| |||| |||| ||| ||||||| |||| ||| | | Sbjct 238935 CCAGTACCAATTCCATCAGCACCATTGATAAGAACCATTGGCACAACAGGGCAGTACATC 238876 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCAC-GTATTTCAAAACGGAATTGTCA-GC-C 151992 | ||||| | || | ||||| |||| ||| || | ||| || | ||| || | Sbjct 238875 ACTGGCTCAATCTTCTTTCCGTCGTCCA-CACTGTGGTCGTAAATGGGCTCATCAAGCAC 238817 Query 151993 GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCC 152052 || ||||| |||| | | || || | ||| || || || || | || || Sbjct 238816 TGA--GAATACTCGTCTCGCGAACGGCGACAGTCTCGTAAAAATATAACGAGGACTTGCG 238759 Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112 ||||| |||| ||||| || || | ||||| | |||| |||||||| ||| | Sbjct 238758 GCATCAGTGCCTCCTGCGAGACGACTACCAAAATTTCCACTTGGCTCGAGACAGTTTATA 238699 Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTC-ACAATCGTGCCCTGCAGACTCGCTTC 152171 ||||| | || || ||||| || || || | | | |||||| |||| | ||||| Sbjct 238698 TTGTTAGATCCGACAAAATTTTGCGC-AAGTCCGATAATCGTTTGATGCATAGAAGCTTC 238640 Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC 152231 ||||||||| || || || | || | || |||||| |||||| | |||||||||| || Sbjct 238639 ACCGTGGTGGTAAGCAGTGTTTTCTGAGACGTATCCACCCAACTCCACCACCTTCATATC 238580 Query 152232 CGTCG--TCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAA 152289 ||| ||||| ||| | ||| || | || ||||| || || ||||| || Sbjct 238579 --TCGAACGAGGTTGCGCTTAAAACAAGCAAACATGACCTTTCGTTGTCCAGGTTTGAAC 238522 Query 152290 CCGTCCACCACGTGAGGAATCGAACG 152315 ||||| | || |||||| ||||| Sbjct 238521 CCGTCGATTACAGAAGGAATAGAACG 238496 >seq101 Length=586485 Score = 105 bits (116), Expect = 7e-18 Identities = 308/463 (67%), Gaps = 25/463 (5%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 |||||| |||| ||||||||||| ||||||||||| || | | |||||||||||||| Sbjct 138408 TAATCAGCGACACGCTTTTCAAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTCTCCATA 138349 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCC---CCAAACTGTGCCATGAGG 74579 ||||||| ||||| | | ||||| |||||| || | | | | |||| Sbjct 138348 AAGTCGAATGGGTTGGTAACCTTGTAAAC---CTTCTCATTGCCGA---GGGAAAGGAGG 138295 Query 74580 ---CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGT 74636 ||||| || || || | |||||| ||| |||| || | |||||||| || Sbjct 138294 AGACGATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAGA 138235 Query 74637 TTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC-CATTG--GACA 74693 || || || ||||| || | ||||| ||| | ||| |||| | || ||| Sbjct 138234 GCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACG 138175 Query 74694 ATCTTGTGAATGT--CTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACG 74750 || | | || | ||| |||| | | ||| ||| ||| | || | || | Sbjct 138174 GCCTGG--ACTGCTGCCTTGCTTGGGCGATGCT---TCAAGTGGGAGAAGAGAAGGCATG 138120 Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 | || || ||| || || || | | ||||| || || || || | ||| ||| Sbjct 138119 -CGAAGTCAGTGTGCAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCA 138061 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 | ||| || ||||||||||||||||| ||||||| ||| || |||||||||||||| Sbjct 138060 GCCATGAGGCCACGCTTCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATA 138001 Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG 74913 || || ||| || ||||| ||||| ||||| || || |||| Sbjct 138000 CCCTCAACAGCGGCGAAGGCAACAAGACGTTGGGC-AAAGGTG 137959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212381534200