Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq400 185 1e-41 seq76 181 1e-40 seq224 138 1e-27 seq486 122 1e-22 >seq400 Length=416305 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||| ||||| || ||||| ||||| |||||| Sbjct 399556 ATGCAAATCTTCGTCAAGACCCTCACCGGGAAGACCATCACTCTCGAGGTGGAGTCATCG 399615 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| ||||| | || |||||||| |||||||| || || || ||||| Sbjct 399616 GATACTATCGATAATGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGACCAA 399675 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| || || |||||| | ||||||| || ||| | | ||||| ||| Sbjct 399676 CAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTCCGACTACAAT 399735 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || |||||| | ||| | |||||||| ||||| Sbjct 399736 ATCCAAAAGGAGTCTACACTTCATTTGGTCCTTCGTCTTCGTGGTGG 399782 Score = 149 bits (164), Expect = 7e-31 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 27416 TTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTG 27475 |||||||||| | ||||||||||| || || || ||||| |||||| |||| || | Sbjct 399338 TTGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCGGATACTATCG 399397 Query 27476 CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAA 27535 || | ||| | || ||||||||||||||||| || || || ||||| || ||||| | Sbjct 399398 ACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCACCGGACCAACAACGTCTTA 399457 Query 27536 TTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 | ||||||||||||||||| ||||| | || || || | ||||| || |||| |||| Sbjct 399458 TCTTTGCTGGTAAGCAACTTGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGG 399517 Query 27596 AATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || | || | || || || ||||| Sbjct 399518 AATCTACTCTGCACTTGGTTCTCCGACTCCGTGGTGG 399554 Score = 141 bits (156), Expect = 1e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| |||||||| || |||||||| ||||| || | ||| | || | ||| | Sbjct 399067 ACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCCGACACCATCGATAACGTCAAGTCC 399126 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||||||||||||||| || || ||| | || ||||| || ||| Sbjct 399127 AAGATCCAGGACAAGGAGGGAATTCCTCCAGATCAACAACGTTTGATCTTTGCCGGAAAG 399186 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||||| ||||| || | || || || |||| ||||| ||||| ||||| Sbjct 399187 CAGCTCGAGGATGGACGTACTCTGTCTGATTACAACATCCAGAAGGAGTCCACCCTTCAC 399246 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | ||| | ||||| || || || Sbjct 399247 TTGGTCCTCCGTCTCCGTGGCGG 399269 Score = 141 bits (156), Expect = 1e-28 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | || |||||||||||||| | || || ||||| Sbjct 399784 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACTATTACATTGGAAGTGGAGTCTTCA 399843 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| | || || ||||| |||||||| ||||| ||||| || Sbjct 399844 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGATCAA 399903 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| | ||||| || || |||||| | ||||||| |||||| || ||| || || || Sbjct 399904 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGTCGTACACTCAGC-GATTACAA 399962 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 | |||||||| |||| | || | || | |||||||| || |||||| Sbjct 399963 CATTCAAAAGGAGAGCACTTTGCACTTGGTGCTTCGTCTTCGTGGAGGACAA 400014 >seq76 Length=131010 Score = 181 bits (200), Expect = 1e-40 Identities = 675/1039 (65%), Gaps = 37/1039 (4%) Strand=Plus/Plus Query 80725 TCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GC 80783 ||||| || || ||||| |||| || || || | ||| || || | || || || Sbjct 90821 TCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATT-GCTCTTTCTTGC 90879 Query 80784 CTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTA-ACAACCC 80842 ||| |||| |||||| |||| |||||| | ||||| ||| | || ||||| Sbjct 90880 CTCAGGAACTGGGTAGTAGTTGACATCGATAATCTTGTTCAAGTT-CTTGACGACAACTT 90938 Query 80843 GTGTAACATCATGAAGTTTCTGAAAGTCG-AATTGG-----TTCCCCTTCACAAATGCCG 80896 | || || ||||| ||||| || || || ||| ||| | | ||| ||| | Sbjct 90939 GGCAGACCTCGTGAAGCTTCTGGAAATCATAAGTGGCAGTCTTCTCGTCGACATATGTTG 90998 Query 80897 GAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAAACTCGA 80953 | || || ||||||| |||||| || ||||| || | || | ||| ||||| Sbjct 90999 GGAGAGCAAGCGACGCCAAATTGCAACAAGCGACCTCATCTGGTGCA-CAGTA--CTCGA 91055 Query 80954 CGATTTCCGTGCACAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGACTT 81011 | || || |||||||| || || ||| || ||||| || || || ||||| ||| Sbjct 91056 CAATCTCAGTGCACAAGTTGGAG--CTTCGGATGGTACCGAGATTCTTTTGGTTGCTCTT 91113 Query 81012 GGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAG 81071 ||||||||| |||||||| |||| | ||| | |||||||| || | || || Sbjct 91114 TCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCAAG 91173 Query 81072 GATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATA 81131 || | || ||||| || | || |||| |||||| ||||| || | | | || Sbjct 91174 AATAGAGTACCAAAGCTTTTGGGCTTTGATGCTCTTGCGACCCTTGCCCTCAGACTCGTA 91233 Query 81132 CTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTT 81191 || | || | ||||||| | |||||| | || | | | || |||||||| Sbjct 91234 TTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGACACTCGTT 91293 Query 81192 AGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGAT 81251 ||||||||||| ||||||| || || || ||| ||||||||| || || || Sbjct 91294 AGGGCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAAT 91353 Query 81252 CCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAA 81311 |||||| ||| || || || ||| || ||||||| | || ||||| || | Sbjct 91354 CCAGAGAGCGTAAAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAG 91413 Query 81312 CTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC---- 81366 ||||| || || | | || || ||||||||||| || || | ||||| | || Sbjct 91414 GTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACCAGG 91473 Query 81367 -CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACAT 81425 | |||| | ||||| || | || || | ||| || |||||| || | | ||| Sbjct 91474 ACGCTTGTTA---CCACCTTGATCAACATATCTGGCGGTGTTGTTAAAAACTCTGAGCAT 91530 Query 81426 AGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCAC 81485 ||| | ||| || | || | ||||| ||||| | ||| | || | || || | Sbjct 91531 AGGAACGATTCCGTTGGAGTTTCCGTTGGTACCGGCAATATAAGCACCAGTAGCACGGAT 91590 Query 81486 CTTGCTGA---TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTT 81542 || ||| ||| |||||||| ||||| | |||||||||| |||||| || Sbjct 91591 TCTG-TGAACGTTG--AGACCGATACCACCAGCGTTCTTTGAAATCATAGCACAAATCTT 91647 Query 81543 CATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGA 81602 || || || ||||| || || ||||| || | |||||||| | || ||| ||| ||| Sbjct 91648 CAATGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATCAGGAAGCAGGATGA 91707 Query 81603 CATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACG 81662 | || | | || || || ||| || || |||| ||||| |||| || Sbjct 91708 AAGTTGTGCCTGTGGTGTACCAGCTGCGAAAAGGGTGGGGGAGGCGTGGGTGAAGTATTT 91767 Query 81663 GTTTGACATCAGGTCATAGGTTTCCTTGAC-GCGTGGAATATCGTCACCGTGAATACCGA 81721 | | ||||||| || ||||| || || | || | | ||||| |||||||| || || | Sbjct 91768 GCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCG-ATATCCTCACCGTGTATTCCCA 91826 Query 81722 TAGCTACACGCATAAACAT 81740 || |||||||||| ||| Sbjct 91827 CCGCAACACGCATAATCAT 91845 >seq224 Length=493007 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| || || || ||||| ||||| |||| | || | ||| | || | Sbjct 271718 ACGGGCAAGACCATCACCCTCGAGGTCGAGTCGAGTGACACGATCGATAATGTCAAATCC 271659 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||||||||||||||| || || || || || || ||||| || || || ||| Sbjct 271658 AAGATCCAGGACAAGGAGGGAATCCCCCCTGATCAACAACGCCTAATCTTCGCCGGCAAG 271599 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 |||||||| || | |||||||| | ||||| || |||| ||||| || || |||||| Sbjct 271598 CAACTCGAAGACGGCCGTACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTTCAT 271539 Query 27610 CTAGTCTTGCGTCTTCGCGGTGGA 27633 || ||||| ||||| || || ||| Sbjct 271538 CTCGTCTTACGTCTACGTGGAGGA 271515 >seq486 Length=791322 Score = 122 bits (134), Expect = 1e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| ||||| || ||||| ||||| | || |||||||| || | || Sbjct 145123 CTTCGTCAAGACCCTTACGGGTAAGACCATTACATTGGAAGTTGAGTCTTCGGACACAAT 145064 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | ||| | || || |||||||||||||| || || || ||||| || ||| | Sbjct 145063 CGATAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAACAACGTTT 145004 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || ||||| |||||||||||||||| || || || |||| || || ||||||| Sbjct 145003 GATCTTCGCTGGAAAGCAACTCGAGGATGGACGCACTCTTTCAGATTACAACATCCAAAA 144944 Query 27594 GG 27595 || Sbjct 144943 GG 144942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306628822480