Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq400 140 3e-28 seq224 100 2e-16 >seq400 Length=416305 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| |||||| ||||||| | |||||||| | || Sbjct 399784 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACTATTACATTGGAAGTGGAGTCTTCA 399843 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| ||| || || || || || || || ||||| |||||| Sbjct 399844 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGATCAA 399903 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||||||||| |||||||| || || || | |||||||||| Sbjct 399904 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGTCGTACACTCAGCGATTACAAC 399963 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||| || || || ||||| | ||| | || || || Sbjct 399964 ATTCAAAAGGAGAGCACTTTGCACTTGGTGCTTCGTCTTCGTGGAGG 400010 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||| ||| | || ||||| || ||||| | || Sbjct 399556 ATGCAAATCTTCGTCAAGACCCTCACCGGGAAGACCATCACTCTCGAGGTGGAGTCATCG 399615 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || ||||| || || || || || ||||| || ||| Sbjct 399616 GATACTATCGATAATGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGACCAA 399675 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| |||||||| || | ||| | ||||| ||||| Sbjct 399676 CAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTCCGACTACAAT 399735 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || | |||||||| | ||| | || ||||| || Sbjct 399736 ATCCAAAAGGAGTCTACACTTCATTTGGTCCTTCGTCTTCGTGGTGGTAT 399785 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 ||||| ||| |||| || ||||| ||||| | |||||| | || || | ||||| Sbjct 399067 ACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCCGACACCATCGATAACGTCAAGTCC 399126 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || || ||||| || || || || || |||||||| ||||| || | ||||| || Sbjct 399127 AAGATCCAGGACAAGGAGGGAATTCCTCCAGATCAACAACGTTTGATCTTTGCCGGAAAG 399186 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | || || | || | || ||||||||||| || |||||||| ||| | || Sbjct 399187 CAGCTCGAGGATGGACGTACTCTGTCTGATTACAACATCCAGAAGGAGTCCACCCTTCAC 399246 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| | ||| | || || || || Sbjct 399247 TTGGTCCTCCGTCTCCGTGGCGGTAT 399272 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 26998 TTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTG 27057 |||| || || ||||||||||| | || || || || ||||| | || || | || | Sbjct 399338 TTGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCGGATACTATCG 399397 Query 27058 AGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAA 27117 | | ||||| || ||||| ||||| || ||||| ||||| || ||||| ||| | | Sbjct 399398 ACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCACCGGACCAACAACGTCTTA 399457 Query 27118 TATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGG 27177 | | || || || ||| | || ||| | || |||| || |||||||| || |||| Sbjct 399458 TCTTTGCTGGTAAGCAACTTGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGG 399517 Query 27178 AGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || || | || |||||| | || | || ||||| || Sbjct 399518 AATCTACTCTGCACTTGGTTCTCCGACTCCGTGGTGGTAT 399557 >seq224 Length=493007 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 || |||||| | || || || || || || || ||| |||| || | |||||| Sbjct 271718 ACGGGCAAGACCATCACCCTCGAGGTCGAGTCGAGTGACACGATCGATAATGTCAAATCC 271659 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || || ||||| || || || || || |||||||| || |||| | ||||||||| Sbjct 271658 AAGATCCAGGACAAGGAGGGAATCCCCCCTGATCAACAACGCCTAATCTTCGCCGGCAAG 271599 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 ||| | |||||| | ||| | || || |||||||| || |||||||||||| | ||| Sbjct 271598 CAACTCGAAGACGGCCGTACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTTCAT 271539 Query 27192 TTGGTTTTGCGTTTGCGGGGTGG 27214 | || || ||| | || || || Sbjct 271538 CTCGTCTTACGTCTACGTGGAGG 271516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434915524102080