Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq400 102 6e-17 >seq400 Length=416305 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| || || || ||||||||||| || || || || Sbjct 399556 ATGCAAATCTTCGTCAAGACCCTCACCGGGAAGACCATCACTCTCGAGGTGGAGTCATCG 399615 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | || ||| | || | || ||| || || || ||| | || || || || Sbjct 399616 GATACTATCGATAATGTGAAGTC-GAAGATTCAGGATAAGGAGGGTATCCCACCTGACCA 399674 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || ||||| ||| |||| || | || || || ||| ||||| Sbjct 399675 ACAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTCCGACTACAA 399734 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| ||||| ||| | ||||| || Sbjct 399735 TATCCAAAAGGAGTCTACACTTCATTTGGT 399764 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | ||||| || || || || | ||||| || || | Sbjct 399784 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACTATTACATTGGAAGTGGAGTCTTCA 399843 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || |||| | | || || || ||| | || |||||||| Sbjct 399844 GACACAATTGATAATGTCAAGTCAAAGA-TCCAGGATAAGGAGGGTATTCCACCAGATCA 399902 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| || || || |||||||| ||| |||| || | || || | |||||||||| Sbjct 399903 ACAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGTCGTACACTCAGCGATTACAA 399962 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| ||||| ||| ||| || || || || Sbjct 399963 CATTCAAAAGGAGAGCACTTTGCACTTGGT 399992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007420788732