Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq237 134 3e-26 seq400 123 6e-23 seq486 111 4e-19 seq224 93.3 1e-13 >seq237 Length=35670 Score = 134 bits (148), Expect = 3e-26 Identities = 214/301 (71%), Gaps = 7/301 (2%) Strand=Plus/Plus Query 7429 AAGGAACTGGAAACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGG-TACTAT 7487 ||||| | | ||| |||||||||||||||| | ||||| || ||||| || ||| Sbjct 10822 AAGGATATAGGAACATTATATTTAATATTTGCTTTATTTTCAGG-ATTATTGGGTACAGC 10880 Query 7488 ATTTTCTATGATTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTGAGTGGTA 7546 |||||| | ||||||| |||||||| | || ||| |||| |||||| | || Sbjct 10881 TTTTTCTGTTCTTATAAGACTAGAATTAAGCGGACCTGGTGTTCAATATATTGCA-GATA 10939 Query 7547 ATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTG 7606 || ||| | ||||| | || || || || || || | | ||||| |||||| | | Sbjct 10940 AT---CAATTATACAATGCGATCATAACTGCCCACGCAATATTAATGATATTCTTTATGG 10996 Query 7607 TTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTC 7666 ||||||| | | | ||||| || |||||||| | || | || ||| | | || | || Sbjct 10997 TTATGCCAGCTTTAATAGGTGGATTCGGAAACTTTTTATTACCATTACTAGTAGGGGGTC 11056 Query 7667 CTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTAT 7726 | |||||||| || || || | ||||||||||||||||||||| |||| ||| |||| Sbjct 11057 CAGATATGGCATTCCCTAGATTAAACAATATAAGTTTTTGATTATTACCACCTAGTTTAT 11116 Query 7727 T 7727 | Sbjct 11117 T 11117 >seq400 Length=416305 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| || ||||| || || |||| |||||||| | || ||| | ||||| Sbjct 399254 AGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCC 399195 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| | |||||||| || || ||||| || |||||||| Sbjct 399194 TCGAGCTGCTTTCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATTCCCTCCTTGTCC 399135 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || | ||||| || | ||||| ||| Sbjct 399134 TGGATCTTGGACTTGACGTTATCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTC 399075 Query 225682 TTGCCCGT 225689 || || || Sbjct 399074 TTACCGGT 399067 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| || || | ||| ||||| ||||| || |||| ||||| || | | ||| Sbjct 399549 ACGGAGTCGGAGAACCAAGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAAAGAGT 399490 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || || ||||| ||||| |||||||| ||||||||||| || || || || Sbjct 399489 GCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGGTCCGGTGGGATGCC 399430 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| ||| || ||||| || || || | ||||| || | Sbjct 399429 CTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATAGTATCCGATGACTCCACCTCGAG 399370 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||||||| ||||| || || Sbjct 399369 GGTGATGGTCTTGCCGGTCAAGGTCTT 399343 Score = 116 bits (128), Expect = 9e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| | |||| || ||||| | ||||||||| | || Sbjct 400005 ACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTGAGTGT 399946 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || | ||||| || ||||| || | ||| ||||| || || |||||||| Sbjct 399945 ACGACCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGAATACC 399886 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || ||||||||| ||| ||| || || |||||||| | ||||| || || Sbjct 399885 CTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCTGAAGACTCCACTTCCAA 399826 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || || |||||||||||||| || || Sbjct 399825 TGTAATAGTCTTGCCCGTCAAGGTCTT 399799 >seq486 Length=791322 Score = 111 bits (122), Expect = 4e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| |||||||| | | ||| | ||||| || || ||||| ||||||||||| Sbjct 144944 TTTTGGATGTTGTAATCTGAAAGAGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGATC 145003 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||||||||||| || || || || |||||||| |||||||| ||| ||| ||| Sbjct 145004 AAACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTATCG 145063 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||||| || | || || || || || || ||||| ||||| Sbjct 145064 ATTGTGTCCGAAGACTCAACTTCCAATGTAATGGTCTTACCCGT 145107 >seq224 Length=493007 Score = 93.3 bits (102), Expect = 1e-13 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 225504 GACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTC 225563 ||| || || || || || || || |||| ||||| || | | || | || ||||| Sbjct 271533 GACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCTTC 271592 Query 225564 TAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTG 225623 || ||||| || |||||||| || |||||||| || || || || || |||||||| || Sbjct 271593 GAGTTGCTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGGATTCCCTCCTTGTCCTG 271652 Query 225624 GATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTT 225683 |||||| || ||| ||||| ||||| | || || || | ||||| ||||| Sbjct 271653 GATCTTGGATTTGACATTATCGATCGTGTCACTCGACTCGACCTCGAGGGTGATGGTCTT 271712 Query 225684 GCCCGT 225689 |||||| Sbjct 271713 GCCCGT 271718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192523117247126