Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq76 289 4e-73 >seq76 Length=131010 Score = 289 bits (320), Expect = 4e-73 Identities = 1115/1735 (64%), Gaps = 25/1735 (1%) Strand=Plus/Plus Query 76812 GTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTT 76871 ||||| ||||||||||| ||||| || ||||||| |||| || ||||||||| || Sbjct 90128 GTACGGAGATAGTACATTCCAGTCTTGAGACCCAACTTCCAGCCTGCGAAATGCATACTG 90187 Query 76872 GTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATG 76931 || | || | || || || || || ||||| || ||| |||||| ||| Sbjct 90188 GTGATCTTACCCATGGTTGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATG 90247 Query 76932 AAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTT 76991 || || || | || || ||||| | | ||||| ||| | || ||||||| || Sbjct 90248 AATGCACCACGGTCGGCAGCCATCTGGACGATGGTACGTTGTGAGATCTCCCAAACGGTC 90307 Query 76992 TTGAAAACTTGTTTGATATCATCTGGAAGGTTTGTA---TTTTGAATGGAACCACCATCT 77048 ||| ||| ||||||||| |||| | ||||| | ||||| || || |||||||| Sbjct 90308 TTGTAAAGAGCCTTGATATCAGCTGGGATGTTTGGAACATTTTGGATTGATCCACCATCA 90367 Query 77049 GATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGG 77108 | || || ||||| || | || ||| | | | | || | | | | || Sbjct 90368 GCAATGATACGGTTCTTCATGTTGTCGGACCAAAGTCCCATATCGACGAGATCCTTGAGA 90427 Query 77109 AGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTG 77168 || || || || | ||| |||||||||| | || | |||| ||| || || | Sbjct 90428 AGCCATGGGTTGACAACTTGGAATTCTCCAGCAAGGACACGTCGAGAGTAGATGTTGGAG 90487 Query 77169 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATA 77228 |||||||| || | | || ||| ||| | ||||||| ||| || ||||||||| Sbjct 90488 GTATATGGCTCGAAGCACTCGTTGAATCCAAGAATTTGACTGGTACTGGCTGTTGGCATA 90547 Query 77229 GGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTAT-CTTTTAGATATTT 77287 || || || | ||||| || | || ||| ||| ||| | | ||| || || Sbjct 90548 GGAGCGACGAGCAAACTGTTACGGATACCGTGTTGAGCGATCTGTTGCTTCAAGCTAGC- 90606 Query 77288 CCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACT 77347 ||||||||||||||| | |||| ||| |||| | || ||||| || || ||| Sbjct 90607 CCAATCCCAAAGATCGGTAGGTGTGACACCCCACATGTCATATTGGAGCTCGCCCTTAGA 90666 Query 77348 AGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGC 77407 ||| || || | |||||| ||||| || || | | | || | || || Sbjct 90667 GGCAGGCGAGCCTTGATATGTCTCATATGGACCATGAATCTTTGCCAACTCCATGGAAGC 90726 Query 77408 TTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCAA 77466 ||| || ||| ||||| || |||||||| | | || || | |||| || || Sbjct 90727 AGTCAAAGCAGCGTGGTAAATGGTCTCGAAAATTTGAATGTTAAGGTGCTTG-GCCTCTG 90785 Query 77467 TACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATAC 77526 | ||||| ||| | | | | | |||||||| || | || ||||| || | | Sbjct 90786 GAGACTCAAAAGGAAGACGAAGAGCCAAGAAGGCATCAGCAAGACCTTGAACACCGAGAG 90845 Query 77527 CAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGT 77586 |||||||||| || | |||| || | || || |||| || || || || | | Sbjct 90846 CAATAGGTCTGTGACGGAAATTGCTCTTTCTTGCCTCAGGAACTGGGTAGTAGTTGACAT 90905 Query 77587 CTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAAT 77646 | ||||| || || | || | || || |||| || || | || || | |||| Sbjct 90906 CGATAATCTTGTTCAAGTTCTTGACGACAACTTGGCAGACCTCGTGAAGCTTCTGGAAAT 90965 Query 77647 CAAATCTTCCA----TCTATAACAAACATGTTC--AAAGCTATAGATGCTAGATTACAAA 77700 || | | || ||| | | ||||| | ||| | || || | ||| ||| Sbjct 90966 CATAAGTGGCAGTCTTCTCGTCGACATATGTTGGGAGAGCAAGCGACGCCAAATTGCAAC 91025 Query 77701 CTGCTACCTCATTAGCGTTGGCA-TATTGTATTATCTCGGTACATAGATTACTACATTTG 77759 || ||||||| | || || || | | ||||| || || | || | | | Sbjct 91026 AAGCGACCTCATCTG-GTGCACAGTACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGG 91084 Query 77760 ATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAAC 77819 || || || ||||| | ||||||||||||| ||||| | ||||| ||||| || || Sbjct 91085 ATGGTACCGAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAA 91144 Query 77820 GGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATC 77879 || | ||||| ||| | || | || | |||||| | ||| | | ||||| || Sbjct 91145 GGGTTTCCGGTCTCAGTTTGAGCCTCAAGAATAGAGTACCAAAGCTTTTGGGCTTTGATG 91204 Query 77880 ATAGATTTGTATCGCCT---CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCT 77936 | ||| | | | ||| || |||| ||| | | ||| || || || Sbjct 91205 CTC---TTGCGACCCTTGCCCTCAGACTCGTATTTCTCATACAACGCTTCGAACTCGTCA 91261 Query 77937 CCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTC-ACCATC 77995 || | ||||| |||| ||||| || || || ||||||||||||| |||||| | || Sbjct 91262 CCGTAGACATCGGCCAAACCAGGACACTCGTTAGGGCACATCAATGTCCAGTCGAGGTTC 91321 Query 77996 TTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGT 78055 || | ||| || ||||| |||||||| || ||||| ||||| ||| ||||| |||| Sbjct 91322 TT-TTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGTAAAAGAGATCACGGGC 91380 Query 78056 TCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATG 78115 | | || || ||||| |||||| || ||||| ||||| | || ||| | || Sbjct 91381 ACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTG 91440 Query 78116 CCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATA 78175 |||||| || || || || || | | | ||||| || || ||||| || ||||| | ||| Sbjct 91441 CCATGGCTCAAGGTAGATGGCGAAAGCACCAGGACGCTTGTTACCACCTTGATCAACATA 91500 Query 78176 TCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGT 78235 |||||||||||| ||| ||||||| | ||| |||| || ||||| || |||| || || Sbjct 91501 TCTGGCGGTGTTGTTAAAAACTCTGAGCATAGGAACGATTCCGTTGGAGTTTCCGTTGGT 91560 Query 78236 TCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGC 78295 || | ||||||| ||| | || || || | || | | || || || || || Sbjct 91561 ACCGGCAATATAAGCACCAGTAGCACGGATTCTGTGAACGTTGAGACCGATACCACCAGC 91620 Query 78296 CATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATC 78355 |||| || || | ||| ||| |||||||| ||||| ||||| || || ||||| || Sbjct 91621 GTTCTTTGAAATCATAGCACAAATCTTCAATGTGTCGTAAATACCATCAATGCTGTCCTC 91680 Query 78356 CATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAA 78415 | |||||| | || || ||| || | ||| || || || || || | Sbjct 91681 CTTCATGTCGATCAGGAAGCAGGATGAAAGTTGTGCCTGTGGTGTACCAGCTGCGAAAAG 91740 Query 78416 TGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGA 78475 || || || || || || || |||| || | | ||||| || || || || | Sbjct 91741 GGTGGGGGAGGCGTGGGTGAAGTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGC 91800 Query 78476 TTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGG 78529 || || ||| || | || ||||| ||||| |||||||| | |||||| || || Sbjct 91801 CTCGATATCCTCACCG-TGTATTCCCACCGCAACACGCATAATCATATGTTGTGG 91854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694664206502560