Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq76 297 3e-75 >seq76 Length=131010 Score = 297 bits (328), Expect = 3e-75 Identities = 1150/1786 (64%), Gaps = 32/1786 (2%) Strand=Plus/Plus Query 75366 TCTT-ATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATA 75424 |||| ||| | |||||| |||||||| | || || | | ||||| ||||||||||| Sbjct 90086 TCTTGATCAACCGTGAATTGAATGGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATT 90145 Query 75425 CCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTC 75484 ||||| || ||||||| |||| || ||||||||| || || | || | Sbjct 90146 CCAGTCTTGAGACCCAACTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTT 90205 Query 75485 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 75544 || || || || || ||||| || ||| |||||| ||||| || || | || || Sbjct 90206 GGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCA 90265 Query 75545 GCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATA 75604 ||||| | | ||||| ||| | || ||||||| || ||| ||| |||||| Sbjct 90266 GCCATCTGGACGATGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATA 90325 Query 75605 TCATCTGGAAGATTTGTA---TTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTG 75661 ||| |||| | |||| | ||||| || ||||| ||||||| || || ||||| Sbjct 90326 TCAGCTGGGATGTTTGGAACATTTTGGATTGATCCACCATCAGCAATGATACGGTTCTTC 90385 Query 75662 ATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATT 75721 || | || ||| | | | ||| | | | | || || || || |||| | Sbjct 90386 ATGTTGTCGGACCAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGGGTTGACAACT 90445 Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || |||||||||| | || | ||||| ||| || || ||||||||| || | | Sbjct 90446 TGGAATTCTCCAGCAAGGACACGTCGAGAGTAGATGTTGGAGGTATATGGCTCGAAGCAC 90505 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 || ||| ||| | ||||||| || || || |||||||| || || | ||||| Sbjct 90506 TCGTTGAATCCAAGAATTTGACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTG 90565 Query 75842 TTTCTGAGACCATGTGTTCTGATTTTAT-CTTTTAGATATTTCCAATCCCAAAGATCTGA 75900 || | || ||| ||| ||| | | ||| || || ||||||||||||||| | Sbjct 90566 TTACGGATACCGTGTTGAGCGATCTGTTGCTTCAAGCTAGC-CCAATCCCAAAGATCGGT 90624 Query 75901 TGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATA 75960 ||| ||| |||| | || ||||| || || || ||| || || | ||| Sbjct 90625 AGGTGTGACACCCCACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCCTTGATA 90684 Query 75961 TGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTC---GCAACTCGCCTCTAACGCACCGTA 76017 ||| || || | || | | | || | || | || | | || ||| ||| Sbjct 90685 TGTCTCATATGGACCATGAATCTTTGCCAACTCCATGGAAGCAGTC---AAAGCAGCGTG 90741 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGAT-CTTGCGCTTCAAGACTATCAAAAGGAT 76076 ||||| || |||||||| | | ||||| | |||| || || || ||||||||| Sbjct 90742 GTAAATGGTCTCGAAAATTTGAATGTTAAGGTGCTTG-GCCTCTGGAGACTCAAAAGGAA 90800 Query 76077 AATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTC 76136 | | | | | || ||||| || || || ||||| || | | |||||||||| || | Sbjct 90801 GACGAAGAGCCAAGAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGAC 90860 Query 76137 TCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGA 76196 |||| || || || |||| ||||| || || | ||| ||||| || || | Sbjct 90861 GGAAATTGCTCTTTCTTGCCTCAGGAACTGGGTAGTAGTTGACATCGATAATCTTGTTCA 90920 Query 76197 GATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCA-TCT 76255 || |||| || |||| || || | || || | |||||| | | || ||| Sbjct 90921 AGTTCTTGACGACAACTTGGCAGACCTCGTGAAGCTTCTGGAAATCATAAGTGGCAGTCT 90980 Query 76256 A-TCACAAACATATTA----AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAG 76310 || |||||| ||||| | || || | ||| ||| || ||||||| | Sbjct 90981 TCTCGTCGACATATGTTGGGAGAGCAAGCGACGCCAAATTGCAACAAGCGACCTCATCTG 91040 Query 76311 CATTGGCA-TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTT 76369 | || || | | ||||| ||||| | || | ||| || || ||||| Sbjct 91041 G-TGCACAGTACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTC 91099 Query 76370 TGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCA 76429 | ||||||||||||| ||| || | ||||| ||||| | || || |||| || ||| Sbjct 91100 TTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCA 91159 Query 76430 ATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGC 76489 | || | || | |||||| | ||| | | ||||| || | ||| | | Sbjct 91160 GTTTGAGCCTCAAGAATAGAGTACCAAAGCTTTTGGGCTTTGATGCTC---TTGCGACCC 91216 Query 76490 TT---CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCC 76546 || ||| || |||| ||| ||| ||| || || || || | ||||| || Sbjct 91217 TTGCCCTCAGACTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCC 91276 Query 76547 AAACCAGGACATTCATTCGGACACATCAATGACCACTC-ACCATCTTCCTTAACCCGTTT 76605 ||||||||||| || || || |||||||||| ||| || | |||| | ||| || || Sbjct 91277 AAACCAGGACACTCGTTAGGGCACATCAATGTCCAGTCGAGGTTCTT-TTCAACACGCTT 91335 Query 76606 CATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATT 76665 ||| |||||||| || ||||| ||||| ||| ||||| |||| | | || || || Sbjct 91336 CATGAAGAGATCTGGAATCCAGAGAGCGTAAAAGAGATCACGGGCACGAACCTCCTCCTT 91395 Query 76666 TCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATA 76725 ||| |||||| || || |||||||| | || ||| | |||||||| || || || Sbjct 91396 TCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTA 91455 Query 76726 TATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATT 76785 || || | | |||| || || || ||||| || ||||| | ||||||||| ||||| || Sbjct 91456 GATGGCGAAAGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTT 91515 Query 76786 ATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACT 76845 | ||||||| | ||| |||| || ||||| || | || || || || | ||||||| Sbjct 91516 AAAAACTCTGAGCATAGGAACGATTCCGTTGGAGTTTCCGTTGGTACCGGCAATATAAGC 91575 Query 76846 TCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAG 76905 ||| ||||| || | || || || || || || || | || || || | Sbjct 91576 ACCAGTAGCACGGATTCTGTGAACGTTGAGACCGATACCACCAGCGTTCTTTGAAATCAT 91635 Query 76906 AGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAG 76965 |||||| ||||||||||| || || || || || || || ||| |||||| | || Sbjct 91636 AGCACAAATCTTCAATGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATCAG 91695 Query 76966 AAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATG 77025 || ||| || | ||| || || || || || | || || || || || Sbjct 91696 GAAGCAGGATGAAAGTTGTGCCTGTGGTGTACCAGCTGCGAAAAGGGTGGGGGAGGCGTG 91755 Query 77026 AGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCC-CATT 77084 ||||| |||| || | | ||||| || || || | || || |||||| || Sbjct 91756 GGTGAAGTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACC 91815 Query 77085 GATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTC 77130 | || ||||| || || |||||||| | |||||| || || || || Sbjct 91816 G-TGTATTCCCACCGCAACACGCATAATCATATGTTGTGGACGCTC 91860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712929685721280