Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq486 89.7 1e-12 seq400 86.0 1e-11 >seq486 Length=791322 Score = 89.7 bits (98), Expect = 1e-12 Identities = 130/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGA 151974 ||||||||||||||||| | | ||| | ||||| || || ||||| || ||||||| Sbjct 144944 TTTTGGATGTTGTAATCTGAAAGAGTGCGTCCATCCTCGAGTTGCTTT--CCAGCGAAGA 145001 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 | | | || ||||||| | ||| || ||||| || || || || |||||| | | Sbjct 145002 TCAAACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTAT 145061 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | | |||| ||| ||| ||||| | ||||| || || ||||| || ||||| |||| Sbjct 145062 CGATTGTGTCCGAAGACTCAACTTCCAATGTAATGGTCTTACCCGTAAGGGTCTTGACGA 145121 Query 152095 AG 152096 || Sbjct 145122 AG 145123 >seq400 Length=416305 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972 ||| ||||| |||||||||||| | || | ||||| || | || |||||||| Sbjct 399975 CTCCTTTTGAATGTTGTAATCGCTGAGTGTACGACCATCCTCCAATTGCTTGCCGGCGAA 399916 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 || | | ||| || || | | || || ||||| || || || ||| |||||| | Sbjct 399915 AATCAATCGCTGTTGATCTGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATT 399856 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || | |||||||| ||| ||||| | |||||||| |||||||| | ||||| || Sbjct 399855 ATCAATTGTGTCTGAAGACTCCACTTCCAATGTAATAGTCTTGCCCGTCAAGGTCTTGAC 399796 Query 152093 GAAGACCTGCAT 152104 |||| |||||| Sbjct 399795 AAAGATCTGCAT 399784 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | ||||| || ||||| || |||||||||||||| | | ||| | Sbjct 399261 GAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAGAGTACG 399202 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || || ||||| ||||| ||||| | | || || || | | ||||| Sbjct 399201 TCCATCCTCGAGCTGCTTT--CCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATTCCC 399144 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || ||||| | || | | |||| ||| ||| || ||||| Sbjct 399143 TCCTTGTCCTGGATCTTGGACTTGACGTTATCGATGGTGTCGGAAGACTCCACCTCAAGG 399084 Query 152064 GTAATAGTTTTGCCCGTGA 152082 || ||||| || || |||| Sbjct 399083 GTGATAGTCTTACCGGTGA 399065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153812979618959