Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq400 165 2e-35 seq486 161 2e-34 seq224 127 4e-24 seq101 107 4e-18 seq177 96.9 7e-15 >seq400 Length=416305 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | || ||| || |||||||||||||| | Sbjct 399555 ACCACCACGGAGTCGGAGAACCAAGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCCGA 399496 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| ||||| || || |||||||| | |||||||||||| || Sbjct 399495 AAGAGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGGTCCGGTGG 399436 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| | || ||| | |||||||| ||||| | || || Sbjct 399435 GATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATAGTATCCGATGACTCCAC 399376 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| ||||| ||||| || ||||| ||||| || Sbjct 399375 CTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGAC 399340 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| |||| || || ||||| || ||||| |||||||| || Sbjct 400010 CCTCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTG 399951 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || |||||||| | ||| || ||||| || ||||| || ||||| || ||| Sbjct 399950 AGTGTACGACCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGA 399891 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| || |||||||||| || || |||| || ||||| |||| || ||| Sbjct 399890 ATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCTGAAGACTCCACT 399831 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || || ||||| |||||||| ||||| || || |||||||| Sbjct 399830 TCCAATGTAATAGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 399784 Score = 156 bits (172), Expect = 9e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || |||| || | ||| || || ||||||||||| |||| Sbjct 399270 ACCGCCACGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGA 399211 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || |||||||| || || || ||||||||||||||||||||||| || || Sbjct 399210 CAGAGTACGTCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGTTGTTGATCTGGAGG 399151 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| ||||||| ||||| |||| || || Sbjct 399150 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTATCGATGGTGTCGGAAGACTCCAC 399091 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || || ||||| |||||||| || Sbjct 399090 CTCAAGGGTGATAGTCTTACCGGT 399067 Score = 154 bits (170), Expect = 3e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 ||||||||| || ||||| |||| ||| | || || |||||||| |||||||| | Sbjct 399783 ACCACCACGAAGACGAAGGACCAAATGAAGTGTAGACTCCTTTTGGATATTGTAGTCGGA 399724 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| || ||||||||||| | ||| || || || || || | || ||||||||| | Sbjct 399723 CAAG-GTTCGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTG 399665 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | ||||||||||| || || ||||| | || || |||||||||| ||||| | || | Sbjct 399664 GGATACCCTCCTTATCCTGAATCTTCGACTTCACATTATCGATAGTATCCGATGACTCCA 399605 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | ||||||||||| ||||| || || | ||||| ||||| || ||||| Sbjct 399604 CCTCGAGAGTGATGGTCTTCCCGGTGAGGGTCTTGACGAAGATTTGCAT 399556 >seq486 Length=791322 Score = 161 bits (178), Expect = 2e-34 Identities = 143/179 (80%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 |||||||||||||| || | ||| ||||| |||||||| ||||| || || || |||||| Sbjct 144944 TTTTGGATGTTGTAATCTGAAAGAGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGATC 145003 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 |||||||||||||| || || ||||||||||| |||||||| | || || ||||| Sbjct 145004 AAACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTATCG 145063 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||||| || ||||| | || || ||||||||||| | ||||| ||||| Sbjct 145064 ATTGTGTCCGAAGACTCAACTTCCAATGTAATGGTCTTACCCGTAAGGGTCTTGACGAA 145122 >seq224 Length=493007 Score = 127 bits (140), Expect = 4e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || | || ||||| | || || || |||||||||||||| | Sbjct 271516 CCTCCACGTAGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 271575 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| || || ||||| || ||||| ||||| | |||||||| ||| || Sbjct 271576 AGGGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGG 271635 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| | ||| || ||||||| ||||| | ||||| Sbjct 271636 ATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTATCGATCGTGTCACTCGACTCGACC 271695 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 ||||| ||||| ||||| ||||| Sbjct 271696 TCGAGGGTGATGGTCTTGCCCGT 271718 >seq101 Length=586485 Score = 107 bits (118), Expect = 4e-18 Identities = 172/247 (70%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 230164 TCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTC 230223 || |||| || | |||| | ||| | |||||| | || ||| ||||||| || Sbjct 138177 TCATCACCGAGGCTGTTGAGATTGAGCAAGAGTTCTTGACTGAGGCTCTTCCTTGTGCTC 138236 Query 230224 TTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTT 230283 || |||||||||| || | | ||| |||||| || || ||||| ||||||||| | Sbjct 138237 TTCTCGGCATGAACGCCAACTTGATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTCC 138296 Query 230284 TCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGC 230343 || | | || || | ||||| || || || | ||||| |||| ||||||||| Sbjct 138297 TCCTTTCCCTCGGCAATGAGAAGGTTTACAAGGTTACCAACCCATTCGACTTTATGGAGA 138356 Query 230344 TCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGC 230403 ||| || || || || || |||||||| |||||||||||| ||||| |||| | Sbjct 138357 ACATCTCTCTTGCCGGAAAGACCAACTTCTTTGAAAAGCGTGTCGCTGATTACCAAAAGG 138416 Query 230404 CCGGTGT 230410 ||||||| Sbjct 138417 CCGGTGT 138423 Score = 91.5 bits (100), Expect = 3e-13 Identities = 153/213 (72%), Gaps = 15/213 (7%) Strand=Plus/Plus Query 109921 GCTAGTAATCTTTAGATTGCAACATCATCAAATTGCGGGAACCCCCTAAAGCATATGATA 109980 |||||| | ||| | |||| |||||||||||||||||| || ||||||||| | | || Sbjct 200995 GCTAGTGACCTTAGGGTTGCGACATCATCAAATTGCGGGGACTCCCTAAAGCTTCTACTA 201054 Query 109981 CCAAGGTTGATTGTGAAAGCATCAGC--TGGCCGAG--AACAGAACTCGGGTATGGTAAA 110036 |||| | | | | |||||| | || |||||| | ||| || || ||||||||||| Sbjct 201055 CCAA-GCGGCTGGCGAAAGC--CCGCCGTGGCCGGGGTAAC-GACCTTGGGTATGGTAAC 201110 Query 110037 AATTCATATGATGCCACAATGGGCAATCCGCAGCCAAGCCTCTAAAGGAAAATTATTCCC 110096 || | ||| ||||||||| ||||| ||||||| ||||| | | | | | Sbjct 201111 AACGTAGCAGAT-ACACAATGGGTAATCCACAGCCAA-CCTCT-----ACACCTTTAGGC 201163 Query 110097 ATGAGGAAGGTTCAACGACTAAACGGTGATGGG 110129 | ||| ||| |||||||||||| ||| |||| Sbjct 201164 AGGAGTGTGGTCCAACGACTAAACAGTGGTGGG 201196 >seq177 Length=65289 Score = 96.9 bits (106), Expect = 7e-15 Identities = 154/212 (73%), Gaps = 13/212 (6%) Strand=Plus/Plus Query 109921 GCTAGTAATCTTTAGATTGCAACATCATCAAATTGCGGGAACCCCCTAAAGCATATGATA 109980 |||||| | ||| | |||| ||||||||||| |||||| || ||||||||| | || Sbjct 54507 GCTAGTGACCTTAGGGTTGCGACATCATCAAACTGCGGGGACTCCCTAAAGCTTCCACTA 54566 Query 109981 CCAAGGTTGATTGTGAAAGC-ATCAGCTGGCCGAG--AACAGAACTCGGGTATGGTAAAA 110037 ||||| | | | | |||||| | || |||||| | ||| || || ||||||||||| | Sbjct 54567 CCAAGCT-GCTGGCGAAAGCCAGTAG-TGGCCGGGGTAAC-GACCTTGGGTATGGTAAGA 54623 Query 110038 ATTCATATGATGCCACAATGGGCAATCCGCAGCCAAGCCTCTAAAGGAAAATTATTCCCA 110097 | |||| |||||||| ||||||||||||| |||||| | | || Sbjct 54624 ACGTGGCAGATGT-ACAATGGGTAATCCGCAGCCAA-CCTCTACACCTCGAGG-----CA 54676 Query 110098 TGAGGAAGGTTCAACGACTAAACGGTGATGGG 110129 |||| |||||||||||||||||||| |||| Sbjct 54677 GGAGGGTGGTTCAACGACTAAACGGTGGTGGG 54708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046732105397966