Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq400 131 1e-25 seq486 95.1 9e-15 >seq400 Length=416305 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| | |||||||||||||| |||||||||||| |||| || | || || Sbjct 399993 CACCAAGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTGAGTGTACGACCATCCTC 399934 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| ||||| || ||||| ||||| ||||||| || | ||| ||||| ||| Sbjct 399933 CAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGAATACCCTCCTTATCCTG 399874 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | || ||||| | || ||||| |||| ||||| ||||| Sbjct 399873 GATCTTTGACTTGACATTATCAATTGTGTCTGAAGACTCCACTTCCAATGTAATAGTCTT 399814 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | |||||| || ||||| ||||| Sbjct 399813 GCCCGTCAAGGTCTTGACAAAGATCTGCAT 399784 Score = 116 bits (128), Expect = 3e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| |||||| |||||||||||||| | || || | || || Sbjct 399251 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCCTCG 399192 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||||||||| || ||||||| ||| | || ||||| ||| Sbjct 399191 AGCTGCTTTCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATTCCCTCCTTGTCCTGG 399132 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||||| || |||||||| | || || ||||| Sbjct 399131 ATCTTGGACTTGACGTTATCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTA 399072 Query 44309 CCCGTGA 44315 || |||| Sbjct 399071 CCGGTGA 399065 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 |||| ||||| || |||||||||||| ||||| |||| | || | || | || || Sbjct 399764 ACCAAATGAAGTGTAGACTCCTTTTGGATATTGTAGTCGGACAAGGTTCGGC-CATCCTC 399706 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| || || || || | ||||| || || | || | ||| ||||| ||| Sbjct 399705 CAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCCTG 399646 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| ||||| | | || || || | || |||||||| | || || ||||| Sbjct 399645 AATCTTCGACTTCACATTATCGATAGTATCCGATGACTCCACCTCGAGAGTGATGGTCTT 399586 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||||||| |||||||||||||| Sbjct 399585 CCCGGTGAGGGTCTTGACGAAGATTTGCAT 399556 >seq486 Length=791322 Score = 95.1 bits (104), Expect = 9e-15 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 ||||||||||||||||||| | || ||| | || || || ||||| || || |||| Sbjct 144942 CCTTTTGGATGTTGTAATCTGAAAGAGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGA 145001 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 ||||||| || || || | || | || ||||| ||| ||||| ||| | | Sbjct 145002 TCAAACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTAT 145061 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | || ||||| | || || || |||| ||||| ||||| ||||| |||||||| |||| Sbjct 145062 CGATTGTGTCCGAAGACTCAACTTCCAATGTAATGGTCTTACCCGTAAGGGTCTTGACGA 145121 Query 44328 AG 44329 || Sbjct 145122 AG 145123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359988079074393