Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq400 143 6e-29 seq224 122 2e-22 >seq400 Length=416305 Score = 143 bits (158), Expect = 6e-29 Identities = 144/186 (77%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||| |||||||| || ||||||||||| |||||||| Sbjct 399065 TCACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCCGACACCATCGATAACGTCAAGT 399124 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || ||||| ||||| || || ||||| | ||||| ||||||| Sbjct 399125 CCAAGATCCAGGACAAGGAGGGAATTCCTCCAGATCAACAACGTTTGATCTTTGCCGGAA 399184 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | |||||||| |||||| | ||||| | ||||| ||| |||| || || || || || | Sbjct 399185 AGCAGCTCGAGGATGGACGTACTCTGTCTGATTACAACATCCAGAAGGAGTCCACCCTTC 399244 Query 178123 ATCTTG 178128 | |||| Sbjct 399245 A-CTTG 399249 Score = 136 bits (150), Expect = 1e-26 Identities = 143/187 (76%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || ||||||||||||||||| || || || ||||| |||||||| Sbjct 399352 ACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCGGATACTATCGACAACGTCAAGTCG 399411 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| || || ||||| |||||||| ||||| |||||||| || || || Sbjct 399412 AAGATTCAGGACAAGGAGGGCATCCCACCGGACCAACAACGTCTTATCTTTGCTGGTAAG 399471 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || || || || || | |||||| | || || ||| |||| || ||||| || ||||| Sbjct 399472 CAACTTGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAATCTACTCTGCA- 399530 Query 178125 CTTGTTT 178131 |||| || Sbjct 399531 CTTGGTT 399537 Score = 118 bits (130), Expect = 3e-21 Identities = 149/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || ||||| ||||||||||| || || Sbjct 399559 CAAATCTTCGTCAAGACCCTCACCGGGAAGACCATCACTCTCGAGGTGGAGTCATCGGAT 399618 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||||||||| || || || ||||| || ||||| || Sbjct 399619 ACTATCGATAATGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGACCAACAG 399678 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 ||||| || ||||| || || || | || ||||| | || |||| |||| || || | Sbjct 399679 CGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAAC-CTTGTCCGACTACAATAT 399737 Query 178103 CCAAAAAGAATCAACACTGCAT 178124 |||||| || || ||||| ||| Sbjct 399738 CCAAAAGGAGTCTACACTTCAT 399759 >seq224 Length=493007 Score = 122 bits (134), Expect = 2e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||||||||| || ||||| ||||| || |||||| Sbjct 271720 TCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGAGTGACACGATCGATAATGTCAAAT 271661 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || |||||||| || || || ||||| || ||||||||||| | Sbjct 271660 CCAAGATCCAGGACAAGGAGGGAATCCCCCCTGATCAACAACGCCTAATCTTCGCCGGCA 271601 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | || |||||||| || | || || | || || ||| |||| || || || || || | Sbjct 271600 AGCAACTCGAAGACGGCCGTACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTTC 271541 Query 178123 ATCTTGTTTT 178132 |||| || || Sbjct 271540 ATCTCGTCTT 271531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203723041335626