Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27]
529 sequences; 69,308,136 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq224 127 2e-24
seq400 116 3e-21
>seq224
Length=493007
Score = 127 bits (140), Expect = 2e-24
Identities = 154/208 (74%), Gaps = 10/208 (5%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || ||||||||||| || ||||| || || ||||||||| ||||| ||||| |||
Sbjct 271516 CCTCCACGTAGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 271575
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| ||||| |||||||||||||| || ||||| ||||| || | |||
Sbjct 271576 AGGGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGG 271635
Query 41756 ACGCTCTCCTTGTCCATGATTT----TTTG-CTTCAACGACGACACAGTGTCGCTCGACT 41810
| | |||||||||| ||| | |||| | | | || | ||||| |||||||
Sbjct 271636 ATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTATCG-----ATCGTGTCACTCGACT 271690
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGT 41838
| ||||| | || || || || |||||
Sbjct 271691 CGACCTCGAGGGTGATGGTCTTGCCCGT 271718
>seq400
Length=416305
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| |||| ||||||||||| |||||||| || ||| |
Sbjct 400010 CCTCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTG 399951
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || || | |||||||||||||| |||| |||||||| || | |||
Sbjct 399950 AGTGTACGACCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGA 399891
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814
| | |||||| ||| ||| ||| ||| | | | | | ||||| ||||||||
Sbjct 399890 ATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCA-ATTGTGTCTGAAGACTCCAC 399832
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || || || || ||||||| ||||| || || ||||||||
Sbjct 399831 TTCCAATGTAATAGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 399784
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/208 (70%), Gaps = 10/208 (5%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || ||||| | |||| || || ||| ||||||||| ||||| || || ||
Sbjct 399269 CCGCCACGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAC 399210
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || ||||||||||| ||||| || |||| || ||||| || | |||
Sbjct 399209 AGAGTACGTCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGTTGTTGATCTGGAGGA 399150
Query 41756 ACGCTCTCCTTGTCCATGATTTT----TTG-CTTCAACGACGACACAGTGTCGCTCGACT 41810
| | |||||||||| ||| || ||| | | | ||| | |||||| ||||
Sbjct 399149 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTATCGATG-----GTGTCGGAAGACT 399095
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGT 41838
||||||| | || || || ||||| ||
Sbjct 399094 CCACCTCAAGGGTGATAGTCTTACCGGT 399067
Score = 91.5 bits (100), Expect = 1e-13
Identities = 162/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| ||| || || |||||| || || || ||||||||
Sbjct 399782 CCACCACGAAGACGAAGGACCAAATGAAGTGTAGACTCCTTTTGGATATTGTAGTCGGAC 399723
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||| || | || || | |||||||| ||||| || || ||||||||||| | ||
Sbjct 399722 AAGGTTCGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGG 399663
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCA-ACGA-CGACACAGTGTCGCTCGACTCC 41812
| | |||||| ||| ||| | || | ||||| | | || | ||| || ||||||
Sbjct 399662 ATACCCTCCTTATCC-TGAATCTTCGACTTCACATTATCG--ATAGTATCCGATGACTCC 399606
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| | || || || || || || || ||||| ||||| || |||||
Sbjct 399605 ACCTCGAGAGTGATGGTCTTCCCGGTGAGGGTCTTGACGAAGATTTGCAT 399556
Score = 89.7 bits (98), Expect = 5e-13
Identities = 151/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | |||| ||||| || |||||||| ||||| ||||| ||
Sbjct 399554 CCACCACGGAGTCGGAGAACCAAGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAA 399495
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| || || ||||| || || || || || || |||||||||| ||
Sbjct 399494 AGAGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGGTCCGGTGGG 399435
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| | || | | ||| | | | ||| || ||||||||
Sbjct 399434 ATGCCCTCCTTGTCC-TGAATCTTCGACTTGACGTTGTCGATAGTATCCGATGACTCCAC 399376
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
||| | || || || || || |||| ||||| ||
Sbjct 399375 CTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGAC 399340
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462300943014800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |