Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq224 127 2e-24 seq400 116 3e-21 >seq224 Length=493007 Score = 127 bits (140), Expect = 2e-24 Identities = 154/208 (74%), Gaps = 10/208 (5%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || ||||||||||| || ||||| || || ||||||||| ||||| ||||| ||| Sbjct 271516 CCTCCACGTAGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 271575 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| ||||| |||||||||||||| || ||||| ||||| || | ||| Sbjct 271576 AGGGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGG 271635 Query 41756 ACGCTCTCCTTGTCCATGATTT----TTTG-CTTCAACGACGACACAGTGTCGCTCGACT 41810 | | |||||||||| ||| | |||| | | | || | ||||| ||||||| Sbjct 271636 ATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTATCG-----ATCGTGTCACTCGACT 271690 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGT 41838 | ||||| | || || || || ||||| Sbjct 271691 CGACCTCGAGGGTGATGGTCTTGCCCGT 271718 >seq400 Length=416305 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| |||| ||||||||||| |||||||| || ||| | Sbjct 400010 CCTCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTG 399951 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || | |||||||||||||| |||| |||||||| || | ||| Sbjct 399950 AGTGTACGACCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGA 399891 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| ||| ||| | | | | | ||||| |||||||| Sbjct 399890 ATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCA-ATTGTGTCTGAAGACTCCAC 399832 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || ||||||| ||||| || || |||||||| Sbjct 399831 TTCCAATGTAATAGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 399784 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 10/208 (5%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||| || || ||| ||||||||| ||||| || || || Sbjct 399269 CCGCCACGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAC 399210 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || ||||||||||| ||||| || |||| || ||||| || | ||| Sbjct 399209 AGAGTACGTCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGTTGTTGATCTGGAGGA 399150 Query 41756 ACGCTCTCCTTGTCCATGATTTT----TTG-CTTCAACGACGACACAGTGTCGCTCGACT 41810 | | |||||||||| ||| || ||| | | | ||| | |||||| |||| Sbjct 399149 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTATCGATG-----GTGTCGGAAGACT 399095 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGT 41838 ||||||| | || || || ||||| || Sbjct 399094 CCACCTCAAGGGTGATAGTCTTACCGGT 399067 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||| || || |||||| || || || |||||||| Sbjct 399782 CCACCACGAAGACGAAGGACCAAATGAAGTGTAGACTCCTTTTGGATATTGTAGTCGGAC 399723 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || || | |||||||| ||||| || || ||||||||||| | || Sbjct 399722 AAGGTTCGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGG 399663 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCA-ACGA-CGACACAGTGTCGCTCGACTCC 41812 | | |||||| ||| ||| | || | ||||| | | || | ||| || |||||| Sbjct 399662 ATACCCTCCTTATCC-TGAATCTTCGACTTCACATTATCG--ATAGTATCCGATGACTCC 399606 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || || || || ||||| ||||| || ||||| Sbjct 399605 ACCTCGAGAGTGATGGTCTTCCCGGTGAGGGTCTTGACGAAGATTTGCAT 399556 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||| ||||| || |||||||| ||||| ||||| || Sbjct 399554 CCACCACGGAGTCGGAGAACCAAGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAA 399495 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || || ||||| || || || || || || |||||||||| || Sbjct 399494 AGAGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGGTCCGGTGGG 399435 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| | || | | ||| | | | ||| || |||||||| Sbjct 399434 ATGCCCTCCTTGTCC-TGAATCTTCGACTTGACGTTGTCGATAGTATCCGATGACTCCAC 399376 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 ||| | || || || || || |||| ||||| || Sbjct 399375 CTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGAC 399340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462300943014800