Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq226 165 1e-35 seq257 82.4 9e-11 >seq226 Length=19278 Score = 165 bits (182), Expect = 1e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 145646 TGGGAAAGGGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGT 145705 |||||||||| ||||| | |||||||||| ||||| || ||||||| | || Sbjct 16522 TGGGAAAGGGGCGGGGCGCGCGCGTCAGCTGGACGCGCAGGGCGTCGACGTGGTCGGCGT 16581 Query 145706 AGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGG 145765 ||||||| ||||| || ||||||||| | | ||||| ||||||| || | ||| Sbjct 16582 AGACGTGGGCGTCGCCGAGGACGTGGGTCAGCGAGCCGGGGACGAGGCCGCAGACGCGGG 16641 Query 145766 CGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGT 145825 ||| ||||| ||| ||||||| ||||||||| |||||||||||||| || || ||||||| Sbjct 16642 CGAGCATGTGGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACGCCGAGGCCCATGT 16701 Query 145826 CCCCCGAGCGCTGGTACAGCTGGCAG 145851 | | ||||||||||| ||||||||| Sbjct 16702 CGCAGGAGCGCTGGTAGAGCTGGCAG 16727 Score = 123 bits (136), Expect = 3e-23 Identities = 289/422 (68%), Gaps = 32/422 (8%) Strand=Plus/Plus Query 145860 CCCGCCCG--CCACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGG 145916 |||||||| ||||||| ||||| ||| | | |||||| |||||||| |||| Sbjct 16860 CCCGCCCGTCCCACGTAAAACTGCGCAAAC-ATGTGGCACGGCGGCAGCACCATCAGCCC 16918 Query 145917 CAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCC-----TCCTGCT-CTCGGGGTTCCT 145970 |||||| |||||||||||||| || |||| | || ||| | ||| | | Sbjct 16919 CAGGTCGCGCGGGTTCCAGGCGGACAGCACGATGCGGCGGTCGTGCGGCGCGGTGCGCAG 16978 Query 145971 CTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTT 146030 |||| | | | || | || |||||||| ||||||| || ||| || | | Sbjct 16979 CTTGCGCACGACC-TCGG---CC--AGCTGGTCGACGCCCTCGCCGGTGTAGTCGGCGTC 17032 Query 146031 GGAGTCCACG-TACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGT 146089 || | || || |||||||| || ||||| | ||||||||| ||||||||||| || |||| Sbjct 17033 GG-GCCCGCGGTACGCGGCGCCAAAGTGGCGCCACTGGAAGCCGTAGACGGGGCCGAGGT 17091 Query 146090 CCCCGGGCTCCCTGT-GCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCG 146148 | || | | || | | ||||| | ||| |||||||| | || ||||||||| || Sbjct 17092 CGCCCTCGGCGCGGTCGGCAAAGCCCTG-GCGGTCGAGGAAGGCGCGCGACCCGTTGCCG 17150 Query 146149 TCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGAC------CCCCTG 146202 |||||||| | ||||| | ||| ||||| ||| ||| ||| || | | Sbjct 17151 TCCCAGATGTGCACGCCGCGCGC-----GCTCA-GCGAGGCCGACGACGTCTCGCCGCGG 17204 Query 146203 ATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGG 146262 |||||||| |||||||| || || || | | ||||||| | ||| || |||||||| Sbjct 17205 ATGAACCACAGCAGCTCCTCCAGCACGGCGCGGAAGAAGACGCGCTTCGTCGTCAGCAGC 17264 Query 146263 GG 146264 || Sbjct 17265 GG 17266 >seq257 Length=16631 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 36801 CGGGTTCTACAACACCCCGGTGCTGGTGGTGGACTTTGCCAGCCTGTACCCCACCATCAT 36860 || |||||||| || ||||||| ||||| |||||||| ||||||||||||| | | | || Sbjct 15617 CGCGTTCTACAGCAGCCCGGTGGTGGTGCTGGACTTTACCAGCCTGTACCCGAGCCTGAT 15676 Query 36861 CCAGGCCCACAACCTCTGCTACTCCACC 36888 || |||||||||||||||| ||| Sbjct 15677 GATCGCGTACAACCTCTGCTACTCGACC 15704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590070132132160