Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 215 5e-51 seq204 167 2e-36 seq233 165 8e-36 seq23 138 1e-27 seq34 84.2 2e-11 >seq1 Length=398088 Score = 215 bits (238), Expect = 5e-51 Identities = 324/455 (71%), Gaps = 4/455 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| || ||||||||| ||| || ||| | |||| | |||| | Sbjct 36595 AGAAGGCCGACTGGGCCCTTCGCTGGATCTCCGACAAGGAGTCTACCTTTGCGCAGCGTC 36654 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| || ||||| |||||||||||| ||||||| ||| |||| | |||| || | Sbjct 36655 TGGTCGCATTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGCGCTTTCTCGTCCATCTTCT 36714 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| |||||||| |||||||||||||| ||| ||||||||| ||||| | | Sbjct 36715 GGCTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTG 36774 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 ||||||| ||||| |||||| ||||| |||||||| ||| || | | || || | Sbjct 36775 ACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTTCTCCCATCTGAAGAACCGCCCCA 36834 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || | | | ||| ||| || ||| || ||| ||||||||| ||||||| Sbjct 36835 GCAAGAAGGTTATTGAGGACATCATCGTCGATGCCGTCAAGATCGAGCAGGAGTTCCTCA 36894 Query 117282 CCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACAT 117339 |||| || ||||| |||| |||||||| | || | ||| | ||| ||| ||||| Sbjct 36895 CCGAGGCTCTGCC-CTGCGCCCTGCTGGGCATGAACT-CGACGCTCATGAAGCAGTACAT 36952 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399 ||||| || ||||| | |||||| | || | | || |||| ||| | || Sbjct 36953 TGAGTTTGTGGCCGATCGCCTGCTGGTTTCTCTCGGCAACGACAAGGTGTACCGCTCGAG 37012 Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434 |||||| | ||||| ||| | ||||||| ||| Sbjct 37013 CAACCCCTTTGACTTCATGGAGAACATCTCCCTGG 37047 Score = 188 bits (208), Expect = 7e-43 Identities = 213/285 (75%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| ||||||||||| | |||||| | || ||| Sbjct 36190 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACGGCTGAGGAGATCGATCTG 36249 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||||| | ||||||| | ||| ||| ||| ||||||| ||||| Sbjct 36250 TCCAAGGACATGCACGACTGGAACAACCGCCTGACCGATGACGAGCGGTTCTTCATATCC 36309 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || ||||| |||||||| || ||||| ||||||||||| ||||||||||| Sbjct 36310 CACATCCTTGCCTTCTTCGCCGCGTCGGATGGCATTGTCAACGAGAACCTGGTCGAGCGC 36369 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| ||||| ||||||| || || ||||||||||| |||||| ||| Sbjct 36370 TTCAGCGGCGAGGTCCAGGTTCCCGAGGCCCGTTGTTTCTACGGCTTCCAGATCATGATG 36429 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| | ||||| || | || || ||||||||||| ||| Sbjct 36430 GAGAACATCCACTCTGAGACCTACTCTCTGCTCATCGACACATAC 36474 >seq204 Length=21219 Score = 167 bits (184), Expect = 2e-36 Identities = 176/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || ||||||||||| ||||||||| | || || || | Sbjct 5682 AAGATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGAGC 5741 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | ||||| || || | ||||| ||||||||||| | ||| Sbjct 5742 TCGGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGAC 5801 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| ||||| || |||| ||||||||| ||||||| Sbjct 5802 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTAC 5861 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||||||||||||| ||||||||| || ||| ||||| || | ||||||| Sbjct 5862 AACATCCAGAAGGAGAGCACGCTGCACCTGGTGCTGCGCCTGCGTGGCGGCG 5913 >seq233 Length=18884 Score = 165 bits (182), Expect = 8e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || |||||||| ||||| || |||||| | || || || | | Sbjct 2259 ATGCAAATCTTCGTCAAGACGCTCACCGGCAAGACGATCACCCTGGAGGTGGAGTCGTCG 2200 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || |||| ||||| ||||||||||| ||||||| Sbjct 2199 GACACGATCGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCA 2141 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| |||||||| |||||||| || | ||||| || | ||||||||| Sbjct 2140 GCAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACGCTGAGCGACTACAA 2081 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | |||||||| || ||| | ||| || | ||||| Sbjct 2080 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTGCGCGGCGG 2033 Score = 163 bits (180), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || |||||||| ||||| || |||||| | || || || | | Sbjct 2031 ATGCAAATCTTCGTCAAGACGCTCACCGGCAAGACGATCACCCTGGAGGTGGAGTCGTCG 1972 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || |||| || || ||||||||||| ||||||| Sbjct 1971 GACACGATCGACAACG-TCAAGTCGAAGATTCAGGATAAGGAGGGCATCCCGCCGGACCA 1913 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| |||||||| |||||||| |||| |||||||| | ||||||||| Sbjct 1912 GCAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACCCTGAGCGACTACAA 1853 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| ||||||||| | |||||||| || ||| | || || | || ||| Sbjct 1852 CATTCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGTGGC 1804 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| || || || |||| || || || | Sbjct 1575 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACGATTACGCTCGAGGTGGAGAGCAGC 1516 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| ||||| || || | ||||| ||||| ||||| ||||||| Sbjct 1515 GACACGATTGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGGATCCCGCCGGACCA 1457 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| |||||||| |||||||| |||| ||| || || |||||||| Sbjct 1456 GCAGCGGCTGATCTTTGCGGGCAAGCAGCTGGAGGACGGGCGGACGCTGTCGGACTACAA 1397 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| ||||||||| || ||| |||| || |||| || Sbjct 1396 CATCCAGAAGGAGAGCACGCTGCACCTGGTGCTGCGGCTGCGGGGTGG 1349 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| || || || |||| || || || | Sbjct 1803 ATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACGATTACGCTCGAGGTGGAGAGCAGC 1744 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || || | ||||| ||||||||||| ||||||| Sbjct 1743 GACACGATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 1685 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||||||||| |||||||| || | ||| || || ||||||||| Sbjct 1684 GCAGCGGCTGATTTTCGCGGGCAAGCAGCTGGAGGATGGGCGGACGCTGTCCGACTACAA 1625 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| ||||||||| ||||||||| || ||| | || || | || ||| Sbjct 1624 CATTCAGAAGGAGAGCACGCTGCACCTGGTGCTCCGTCTGCGCGGTGGC 1576 >seq23 Length=165582 Score = 138 bits (152), Expect = 1e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| |||||||| | || ||||| || | |||| | Sbjct 62004 TTCGTGAAGACCCTGACGGGCAAGACCATCACTTTGGAGGTCGAGTCCTCGGACACGATC 62063 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| ||||||||||| |||||||||| || || Sbjct 62064 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTG 62123 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| |||||||| |||| || ||||| ||||||||||||||||||| Sbjct 62124 ATCTTTGCAGGCAAGCAGCTGGAGGACGGCCGGACCCTGTCCGACTACAACATCCAGAAG 62183 Query 40879 GAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| | || ||||| || ||| |||| Sbjct 62184 GAGTCGACTCTGCACCTGGTGCTGCG 62209 >seq34 Length=160120 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/233 (68%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 113179 CGCACGCGTCGGCCGGCGCGGCCGGCCTGGACCTGAGGAGCGCCGAG---GAGGCCGTGA 113235 ||| || || |||| ||||||||| |||||| ||||| | | | || || Sbjct 15769 CGCGCGGCTCCGCCGAGGCGGCCGGCTACGACCTGTA---CGCCGCGCGCGCGACCACGA 15713 Query 113236 TTCCGCCGGGCGGCCGCGTCAGCGTCAGCACCGACTTGATAATCTGCCTGCCGCCCGGCA 113295 | || || ||||||||| | |||| ||||||| || || | |||| |||||| Sbjct 15712 TCCCCGCGCGCGGCCGCGCCCTCGTCGACACCGACCTGGCCATGGCCGTGCCCGCCGGCA 15653 Query 113296 CGTACGGCCGCATCTCCTCCAGGTCGGGGCTGGCGTTCAAGCACGGCGTGGAAGCGTTCG 113355 ||||||||||| || | | | || || || || ||||||||| | | | | || Sbjct 15652 CGTACGGCCGCGTCGCGCCGCGCTCCGGCCTCGCCGTCAAGCACGCCATCAACACCGGCG 15593 Query 113356 CGGGCGTGATCGACAACGATTACCGCGGAGTGGTCCGCGTGCTGCTGCGCAAC 113408 | ||||| |||||| ||| |||||||| |||||||| |||||| |||| Sbjct 15592 CCGGCGTCATCGACGCCGACTACCGCGGCCACGTCCGCGTCCTGCTGTTCAAC 15540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515213378023040