Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq1 215 5e-51
seq204 167 2e-36
seq233 165 8e-36
seq23 138 1e-27
seq34 84.2 2e-11
>seq1
Length=398088
Score = 215 bits (238), Expect = 5e-51
Identities = 324/455 (71%), Gaps = 4/455 (1%)
Strand=Plus/Plus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
|||||||||| ||||| || ||||||||| ||| || ||| | |||| | |||| |
Sbjct 36595 AGAAGGCCGACTGGGCCCTTCGCTGGATCTCCGACAAGGAGTCTACCTTTGCGCAGCGTC 36654
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
|||| || ||||| |||||||||||| ||||||| ||| |||| | |||| || |
Sbjct 36655 TGGTCGCATTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGCGCTTTCTCGTCCATCTTCT 36714
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|||| ||||| |||||||| |||||||||||||| ||| ||||||||| ||||| | |
Sbjct 36715 GGCTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTG 36774
Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221
||||||| ||||| |||||| ||||| |||||||| ||| || | | || || |
Sbjct 36775 ACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTTCTCCCATCTGAAGAACCGCCCCA 36834
Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281
|| | | | ||| ||| || ||| || ||| ||||||||| |||||||
Sbjct 36835 GCAAGAAGGTTATTGAGGACATCATCGTCGATGCCGTCAAGATCGAGCAGGAGTTCCTCA 36894
Query 117282 CCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACAT 117339
|||| || ||||| |||| |||||||| | || | ||| | ||| ||| |||||
Sbjct 36895 CCGAGGCTCTGCC-CTGCGCCCTGCTGGGCATGAACT-CGACGCTCATGAAGCAGTACAT 36952
Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399
||||| || ||||| | |||||| | || | | || |||| ||| | ||
Sbjct 36953 TGAGTTTGTGGCCGATCGCCTGCTGGTTTCTCTCGGCAACGACAAGGTGTACCGCTCGAG 37012
Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434
|||||| | ||||| ||| | ||||||| |||
Sbjct 37013 CAACCCCTTTGACTTCATGGAGAACATCTCCCTGG 37047
Score = 188 bits (208), Expect = 7e-43
Identities = 213/285 (75%), Gaps = 3/285 (1%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||| ||||| ||||||||||| | |||||| | || |||
Sbjct 36190 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACGGCTGAGGAGATCGATCTG 36249
Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
|||||||||| | ||||||| | ||| ||| ||| ||||||| |||||
Sbjct 36250 TCCAAGGACATGCACGACTGGAACAACCGCCTGACCGATGACGAGCGGTTCTTCATATCC 36309
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||| | || ||||| |||||||| || ||||| ||||||||||| |||||||||||
Sbjct 36310 CACATCCTTGCCTTCTTCGCCGCGTCGGATGGCATTGTCAACGAGAACCTGGTCGAGCGC 36369
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| ||||| ||||| ||||||| || || ||||||||||| |||||| |||
Sbjct 36370 TTCAGCGGCGAGGTCCAGGTTCCCGAGGCCCGTTGTTTCTACGGCTTCCAGATCATGATG 36429
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
|||||| | ||||| || | || || ||||||||||| |||
Sbjct 36430 GAGAACATCCACTCTGAGACCTACTCTCTGCTCATCGACACATAC 36474
>seq204
Length=21219
Score = 167 bits (184), Expect = 2e-36
Identities = 176/232 (76%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| || || ||||||||||| ||||||||| | || || || |
Sbjct 5682 AAGATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGAGC 5741
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | | | ||||| || || | ||||| ||||||||||| | |||
Sbjct 5742 TCGGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGAC 5801
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| || || |||| ||| ||||| ||||| || |||| ||||||||| |||||||
Sbjct 5802 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTAC 5861
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918
||||||||||||||| ||||||||| || ||| ||||| || | |||||||
Sbjct 5862 AACATCCAGAAGGAGAGCACGCTGCACCTGGTGCTGCGCCTGCGTGGCGGCG 5913
>seq233
Length=18884
Score = 165 bits (182), Expect = 8e-36
Identities = 175/228 (77%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || |||||||| ||||| || |||||| | || || || | |
Sbjct 2259 ATGCAAATCTTCGTCAAGACGCTCACCGGCAAGACGATCACCCTGGAGGTGGAGTCGTCG 2200
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| ||||| || |||| ||||| ||||||||||| |||||||
Sbjct 2199 GACACGATCGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCA 2141
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| |||||||| |||||||| || | ||||| || | |||||||||
Sbjct 2140 GCAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACGCTGAGCGACTACAA 2081
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||||||| | |||||||| || ||| | ||| || | |||||
Sbjct 2080 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTGCGCGGCGG 2033
Score = 163 bits (180), Expect = 3e-35
Identities = 175/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || |||||||| ||||| || |||||| | || || || | |
Sbjct 2031 ATGCAAATCTTCGTCAAGACGCTCACCGGCAAGACGATCACCCTGGAGGTGGAGTCGTCG 1972
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| ||||| || |||| || || ||||||||||| |||||||
Sbjct 1971 GACACGATCGACAACG-TCAAGTCGAAGATTCAGGATAAGGAGGGCATCCCGCCGGACCA 1913
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||||| |||||||| |||||||| |||| |||||||| | |||||||||
Sbjct 1912 GCAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACCCTGAGCGACTACAA 1853
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||| ||||||||| | |||||||| || ||| | || || | || |||
Sbjct 1852 CATTCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGTGGC 1804
Score = 147 bits (162), Expect = 2e-30
Identities = 171/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || |||||||| || || || |||| || || || |
Sbjct 1575 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACGATTACGCTCGAGGTGGAGAGCAGC 1516
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | || |||| ||||| || || | ||||| ||||| ||||| |||||||
Sbjct 1515 GACACGATTGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGGATCCCGCCGGACCA 1457
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| |||||||| |||||||| |||| ||| || || ||||||||
Sbjct 1456 GCAGCGGCTGATCTTTGCGGGCAAGCAGCTGGAGGACGGGCGGACGCTGTCGGACTACAA 1397
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||||||| ||||||||| || ||| |||| || |||| ||
Sbjct 1396 CATCCAGAAGGAGAGCACGCTGCACCTGGTGCTGCGGCTGCGGGGTGG 1349
Score = 131 bits (144), Expect = 2e-25
Identities = 168/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || |||||||| || || || |||| || || || |
Sbjct 1803 ATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACGATTACGCTCGAGGTGGAGAGCAGC 1744
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| ||||| || || | ||||| ||||||||||| |||||||
Sbjct 1743 GACACGATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 1685
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || || | ||||||||| |||||||| || | ||| || || |||||||||
Sbjct 1684 GCAGCGGCTGATTTTCGCGGGCAAGCAGCTGGAGGATGGGCGGACGCTGTCCGACTACAA 1625
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||| ||||||||| ||||||||| || ||| | || || | || |||
Sbjct 1624 CATTCAGAAGGAGAGCACGCTGCACCTGGTGCTCCGTCTGCGCGGTGGC 1576
>seq23
Length=165582
Score = 138 bits (152), Expect = 1e-27
Identities = 154/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || |||||||| |||||||| | || ||||| || | |||| |
Sbjct 62004 TTCGTGAAGACCCTGACGGGCAAGACCATCACTTTGGAGGTCGAGTCCTCGGACACGATC 62063
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| ||||||||||| |||||||||| || ||
Sbjct 62064 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTG 62123
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| || ||||| |||||||| |||| || ||||| |||||||||||||||||||
Sbjct 62124 ATCTTTGCAGGCAAGCAGCTGGAGGACGGCCGGACCCTGTCCGACTACAACATCCAGAAG 62183
Query 40879 GAGGCCACGCTGCATCTAGTGTTGCG 40904
||| | || ||||| || ||| ||||
Sbjct 62184 GAGTCGACTCTGCACCTGGTGCTGCG 62209
>seq34
Length=160120
Score = 84.2 bits (92), Expect = 2e-11
Identities = 159/233 (68%), Gaps = 6/233 (3%)
Strand=Plus/Minus
Query 113179 CGCACGCGTCGGCCGGCGCGGCCGGCCTGGACCTGAGGAGCGCCGAG---GAGGCCGTGA 113235
||| || || |||| ||||||||| |||||| ||||| | | | || ||
Sbjct 15769 CGCGCGGCTCCGCCGAGGCGGCCGGCTACGACCTGTA---CGCCGCGCGCGCGACCACGA 15713
Query 113236 TTCCGCCGGGCGGCCGCGTCAGCGTCAGCACCGACTTGATAATCTGCCTGCCGCCCGGCA 113295
| || || ||||||||| | |||| ||||||| || || | |||| ||||||
Sbjct 15712 TCCCCGCGCGCGGCCGCGCCCTCGTCGACACCGACCTGGCCATGGCCGTGCCCGCCGGCA 15653
Query 113296 CGTACGGCCGCATCTCCTCCAGGTCGGGGCTGGCGTTCAAGCACGGCGTGGAAGCGTTCG 113355
||||||||||| || | | | || || || || ||||||||| | | | | ||
Sbjct 15652 CGTACGGCCGCGTCGCGCCGCGCTCCGGCCTCGCCGTCAAGCACGCCATCAACACCGGCG 15593
Query 113356 CGGGCGTGATCGACAACGATTACCGCGGAGTGGTCCGCGTGCTGCTGCGCAAC 113408
| ||||| |||||| ||| |||||||| |||||||| |||||| ||||
Sbjct 15592 CCGGCGTCATCGACGCCGACTACCGCGGCCACGTCCGCGTCCTGCTGTTCAAC 15540
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515213378023040
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