Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq233 127 2e-24
seq204 114 1e-20
seq376 107 2e-18
seq23 102 7e-17
>seq233
Length=18884
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| ||||| | | | ||||| ||| | || ||||| || || |||||||| ||||
Sbjct 2031 TACCGCCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGC 2090
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
||| ||||| |||||| ||||| || || || |||| || |||||||| || || |
Sbjct 2091 TCAGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCG 2150
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| |||||||||||||| ||| || || || | |||| ||||||| ||| |
Sbjct 2151 GGATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATCGTGTCCGACGACTCCA 2210
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|||| | ||| | ||| |||||||| || || || || || || ||||||
Sbjct 2211 CCTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCATG 2260
Score = 123 bits (136), Expect = 2e-23
Identities = 154/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | || ||| || ||||||||||| ||| || || ||| ||||||
Sbjct 1594 CACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGCCCATCCTC 1653
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || || ||| | || || |||||||| || || || ||||||||||||||
Sbjct 1654 CAGCTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 1713
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | |||| ||||| ||||||| ||||||| || | ||| ||
Sbjct 1714 GATCTTCGACTTGACGTTGTCGATCGTGTCGCTGCTCTCCACCTCGAGCGTAATCGTCTT 1773
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||| ||||| || || ||||| |||||||||
Sbjct 1774 GCCCGTCAGGGTCTTGACAAAGATCTGCATG 1804
Score = 122 bits (134), Expect = 8e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | || ||||| || ||||||||||| ||||||| ||||| |||||
Sbjct 1822 CACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTCCTC 1881
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || || || ||||||| |||||||| || || || ||||||||||| ||
Sbjct 1882 CAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTG 1941
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
||| || || || | |||| ||||||| ||| ||||| | ||| | ||| ||
Sbjct 1942 AATCTTCGACTTGACGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTCTT 2001
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||||| || || || || || || |||||
Sbjct 2002 GCCGGTGAGCGTCTTGACGAAGATTTGCAT 2031
Score = 98.7 bits (108), Expect = 9e-16
Identities = 150/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
|| ||||| ||| | || ||| || || |||||||| || || || ||| ||
Sbjct 1363 CAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTCCGCCCGTC 1422
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
||| ||||| || || || |||| || |||||||| || || || || |||||||||||
Sbjct 1423 CTCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTC 1482
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
|| || || || | || | ||||| ||||||| ||||||| || | |||
Sbjct 1483 CTGGATCTTCGACTTGACGTTGTCAATCGTGTCGCTGCTCTCCACCTCGAGCGTAATCGT 1542
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||||| ||||| || || || || |||||||||
Sbjct 1543 CTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 1576
>seq204
Length=21219
Score = 114 bits (126), Expect = 1e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
|| ||||| ||| | || ||| || || |||||||| ||| | ||||| ||
Sbjct 5897 CAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTC 5838
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
||||||||| || || ||| |||| || |||||||| ||||| || ||||||||||||||
Sbjct 5837 CTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC 5778
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
|| || || || | |||| ||||||| |||||| ||||| | ||| | ||
Sbjct 5777 CTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGCTCTCCACCTCAAGGGTGATGGT 5718
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || || || || || || ||||||||
Sbjct 5717 CTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 5685
>seq376
Length=8930
Score = 107 bits (118), Expect = 2e-18
Identities = 134/184 (73%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 133222 GGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACG 133281
|||||||||| || |||||||| || || || || | | || | || |||||| | |
Sbjct 5446 GGTTGACCACCTGGAACTCGCCTGCCAGCACACGGCGCTGGTAGATGTTGGACGTGTATG 5505
Query 133282 GTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCA 133341
| ||||| ||||||||||||| || ||||||| |||| ||||| ||||| |||||
Sbjct 5506 GCTCGAAGCATTCGTTGTTGCCCAGGATCTGCGAGGTCGATGCCGTCGGCATCGGCGCCA 5565
Query 133342 CCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCC 133401
|||||| | ||| | ||||||| || || || ||| ||| || ||||||||
Sbjct 5566 CCAACAGACTGTTGCGCACGCCGTGCTCCTTGATCTTGAGACGCAGCGAGTCCCAGTCCC 5625
Query 133402 ACAG 133405
||||
Sbjct 5626 ACAG 5629
>seq23
Length=165582
Score = 102 bits (112), Expect = 7e-17
Identities = 155/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| ||||| | | || ||||| ||| | || ||||| || || |||||||| |||
Sbjct 62223 TACCACCGCGCAGACGCAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGG 62164
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
|| || || ||||| ||||| || || || |||| || |||||||| || || |
Sbjct 62163 ACAGGGTCCGGCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCCGGCG 62104
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| |||||||||||||| || || || || | |||| ||||||| | |||||
Sbjct 62103 GGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGA 62044
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730
|||| | || | || ||||| ||||| || || || |||
Sbjct 62043 CCTCCAAAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 62003
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433825620273568
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |