Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq233 154 2e-32 seq204 134 2e-26 seq23 107 2e-18 >seq233 Length=18884 Score = 154 bits (170), Expect = 2e-32 Identities = 166/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||| |||| ||||||||||| ||||| ||||| || | ||| |||||| | Sbjct 1588 ACGGAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGCCC 1647 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || ||||| || || ||||||||||| | ||| | || |||||| Sbjct 1648 ATCCTCCAGCTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTT 1707 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| || |||| ||| | | | ||||||||| ||||| |||| ||| | Sbjct 1708 GTCCTGGATCTTCGACTTGA-CGTTGTCGATCGTGTCGCTGCTCTCCACCTCGAGCGTAA 1766 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || |||||||| || ||||| |||||||| ||||| Sbjct 1767 TCGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 1803 Score = 143 bits (158), Expect = 3e-29 Identities = 163/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||||||||||| || || ||||| || | ||| |||||| || Sbjct 1361 CGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTCCGCCCG 1420 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || ||||||||||| | ||| | | ||||||| Sbjct 1421 TCCTCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTG 1480 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| || |||| ||| | | | ||||||||| ||||| |||| ||| || Sbjct 1481 TCCTGGATCTTCGACTTGA-CGTTGTCAATCGTGTCGCTGCTCTCCACCTCGAGCGTAAT 1539 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||||||| || ||||| || ||||| ||||| Sbjct 1540 CGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1575 Score = 122 bits (134), Expect = 1e-22 Identities = 161/218 (74%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||| |||| || |||||| ||||| ||||| || ||| || || | Sbjct 1816 ACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACC 1875 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || || || ||||| ||||||||||| | ||| | || |||||| Sbjct 1876 GTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 1935 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145 ||| ||| | || | |||| ||| | | | |||||| ||| ||||| || | ||| Sbjct 1936 ATCC-TGAATCTTCGACTTGA-CGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTG 1993 Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || ||||| || |||||||| || ||||||||||| Sbjct 1994 ATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2031 Score = 111 bits (122), Expect = 2e-19 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| |||| || |||||| || || ||||| || ||| || || | || || Sbjct 2050 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCCTC 2109 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || || || || || ||||||||||| | ||| | || |||||||||| | Sbjct 2110 CAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC-T 2168 Query 43094 GATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTT 43151 || | || | |||| ||| | | | |||||| ||| ||||| || | ||||| || Sbjct 2169 GAATCTTCGACTTGA-CGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTC 2227 Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || |||||||| || ||||||||||| Sbjct 2228 TTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2259 >seq204 Length=21219 Score = 134 bits (148), Expect = 2e-26 Identities = 163/221 (74%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||||||||||| || || ||||| || | || || || || Sbjct 5899 CGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 5840 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| || || ||||||||||||| ||| | || ||||||| Sbjct 5839 TCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTG 5780 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTG 43145 ||| ||| || |||| | | | |||||| |||| ||||| || | ||| Sbjct 5779 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGCTC---TCCACCTCAAGGGTG 5723 Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||||| |||||||| || ||||| || ||||| ||||| || Sbjct 5722 ATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATCTT 5682 >seq23 Length=165582 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| |||| || |||||| || || ||||| || | ||| ||||| | Sbjct 62210 ACGCAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCC 62151 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || || || || || ||||||||||| | ||| | || |||||| Sbjct 62150 GTCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 62091 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || |||| | | | |||||| || || || || | ||||| Sbjct 62090 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCCAAAGTGAT 62031 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAA 43174 ||| |||||||| || ||||| || || Sbjct 62030 GGTCTTGCCCGTCAGGGTCTTCACGAA 62004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571811138461120