Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq898 111 3e-19 seq135 87.8 4e-12 >seq898 Length=67485 Score = 111 bits (122), Expect = 3e-19 Identities = 258/387 (67%), Gaps = 18/387 (5%) Strand=Plus/Plus Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070 |||| || |||| || ||||| || ||||||||||| ||||| || || || ||| Sbjct 13905 TGCTCTTTTACGGCCCGCCCGGTACCGGCAAGACGTCCACCATTCTCGCCCTCGCCAAGG 13964 Query 254071 CCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAAC 254130 || | ||| | | |||| ||||||||||||||| || || || ||||| | Sbjct 13965 AGCTCTACGGCCCCGAGTTTATGAAGTCGCGCGTGCTCGAGCTCAATGCCTCGGACGAGC 14024 Query 254131 GCGGGTTGGACGTCGTCCGCGACAAGATCAAG-ACTTTCTCCA-----AGATGTCGATTT 254184 |||| | | |||||||||| || ||||| ||||| || || | | | Sbjct 14025 GCGGCATTTCCATCGTCCGCGAAAAAGTCAAGGACTTTGCCCGCATGCAGCTTACCAACC 14084 Query 254185 CGTCGTTC-----CAACC-CGGCTGTCCG------CCTTTCAAGCTCGTGATCCTGGACG 254232 || || | ||| | ||| |||| || ||||||||| | | || |||| Sbjct 14085 CGCCGCCCGGCTACAAGGACCGCTATCCGTGCCCGCCCTTCAAGCTCATCGTGCTCGACG 14144 Query 254233 AGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACT 254292 |||| ||| ||||||| ||||| ||| |||||| ||||| || ||||||||| || Sbjct 14145 AGGCCGACTCCATGACCCAGGACGCCCAGAGCGCCCTGCGCCGCACCATGGAGACGTACA 14204 Query 254293 CCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCGCTGG 254352 | | || || || ||||| | |||||||||||| | |||||||| ||| ||| Sbjct 14205 GCAAGATCACCCGCTTCTGCCTCATCTGCAACTACGTGACCCGGATCATCGACCCATTGG 14264 Query 254353 CTTCTCGGTGCGCCAAGTTTCGATTCA 254379 | || ||| |||||| || |||| Sbjct 14265 CCAGCCGCTGCAGCAAGTTCCGCTTCA 14291 >seq135 Length=29758 Score = 87.8 bits (96), Expect = 4e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 254020 ACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGTTGG 254079 |||| || ||||| || ||||||||||| || | ||||||||||| || | | | | Sbjct 18484 ACGGCCCGCCCGGCACGGGCAAGACGTCGACGGTGCTGGCGCTGGCACGGCGCATCTACG 18425 Query 254080 GCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGTTGG 254139 || | |||||| | || ||||| ||||| ||||| || ||||| ||||| | | Sbjct 18424 GCACCGCCAACATGCGCCAGATGGTGCTGGAGCTAAACGCGTCCGACGACCGCGGCATCG 18365 Query 254140 ACGTCGTCCGCGACAAGATCAAGACTTT 254167 |||| || ||||| |||||||||| || Sbjct 18364 ACGTGGTGCGCGAGCAGATCAAGACGTT 18337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073753963100672