Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq898 111 3e-19
seq135 87.8 4e-12
>seq898
Length=67485
Score = 111 bits (122), Expect = 3e-19
Identities = 258/387 (67%), Gaps = 18/387 (5%)
Strand=Plus/Plus
Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070
|||| || |||| || ||||| || ||||||||||| ||||| || || || |||
Sbjct 13905 TGCTCTTTTACGGCCCGCCCGGTACCGGCAAGACGTCCACCATTCTCGCCCTCGCCAAGG 13964
Query 254071 CCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAAC 254130
|| | ||| | | |||| ||||||||||||||| || || || ||||| |
Sbjct 13965 AGCTCTACGGCCCCGAGTTTATGAAGTCGCGCGTGCTCGAGCTCAATGCCTCGGACGAGC 14024
Query 254131 GCGGGTTGGACGTCGTCCGCGACAAGATCAAG-ACTTTCTCCA-----AGATGTCGATTT 254184
|||| | | |||||||||| || ||||| ||||| || || | | |
Sbjct 14025 GCGGCATTTCCATCGTCCGCGAAAAAGTCAAGGACTTTGCCCGCATGCAGCTTACCAACC 14084
Query 254185 CGTCGTTC-----CAACC-CGGCTGTCCG------CCTTTCAAGCTCGTGATCCTGGACG 254232
|| || | ||| | ||| |||| || ||||||||| | | || ||||
Sbjct 14085 CGCCGCCCGGCTACAAGGACCGCTATCCGTGCCCGCCCTTCAAGCTCATCGTGCTCGACG 14144
Query 254233 AGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACT 254292
|||| ||| ||||||| ||||| ||| |||||| ||||| || ||||||||| ||
Sbjct 14145 AGGCCGACTCCATGACCCAGGACGCCCAGAGCGCCCTGCGCCGCACCATGGAGACGTACA 14204
Query 254293 CCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCGCTGG 254352
| | || || || ||||| | |||||||||||| | |||||||| ||| |||
Sbjct 14205 GCAAGATCACCCGCTTCTGCCTCATCTGCAACTACGTGACCCGGATCATCGACCCATTGG 14264
Query 254353 CTTCTCGGTGCGCCAAGTTTCGATTCA 254379
| || ||| |||||| || ||||
Sbjct 14265 CCAGCCGCTGCAGCAAGTTCCGCTTCA 14291
>seq135
Length=29758
Score = 87.8 bits (96), Expect = 4e-12
Identities = 108/148 (73%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 254020 ACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGTTGG 254079
|||| || ||||| || ||||||||||| || | ||||||||||| || | | | |
Sbjct 18484 ACGGCCCGCCCGGCACGGGCAAGACGTCGACGGTGCTGGCGCTGGCACGGCGCATCTACG 18425
Query 254080 GCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGTTGG 254139
|| | |||||| | || ||||| ||||| ||||| || ||||| ||||| | |
Sbjct 18424 GCACCGCCAACATGCGCCAGATGGTGCTGGAGCTAAACGCGTCCGACGACCGCGGCATCG 18365
Query 254140 ACGTCGTCCGCGACAAGATCAAGACTTT 254167
|||| || ||||| |||||||||| ||
Sbjct 18364 ACGTGGTGCGCGAGCAGATCAAGACGTT 18337
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073753963100672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |