Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq233 154 1e-32
seq204 147 2e-30
>seq233
Length=18884
Score = 154 bits (170), Expect = 1e-32
Identities = 160/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| |||||||||||||||||||||||||||||||||| ||| || | || |||
Sbjct 1595 ACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGCCCATCCTCC 1654
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| |||| |||||| ||||| || || | ||||||||||||
Sbjct 1655 AGCTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGG 1714
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | |||| | | ||||||||| | ||||||||||||
Sbjct 1715 ATCTTCGACTTGACGTTGTCGATCGTGTCGCTGCTCTCCACCTCGAGCGTAATCGTCTTG 1774
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|||||||| ||||| |||||||| ||||||
Sbjct 1775 CCCGTCAGGGTCTTGACAAAGATCTGCATG 1804
Score = 143 bits (158), Expect = 2e-29
Identities = 160/211 (76%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||||||||||||||||||||| ||||||||||| ||| || |||| |||
Sbjct 1367 ACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTCCGCCCGTCCTCC 1426
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || |||| |||||| ||||| || || | ||||||||||||
Sbjct 1427 AGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGG 1486
Query 45248 ATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306
|| || ||| | || | || | |||| | | ||||||||| | |||||||||||
Sbjct 1487 ATCTTCGACTTGA-CGTTGTCAATCGTGTCGCTGCTCTCCACCTCGAGCGTAATCGTCTT 1545
Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
||||||||| ||||| || ||||| ||||||
Sbjct 1546 GCCCGTCAGGGTCTTGACGAAGATCTGCATG 1576
Score = 134 bits (148), Expect = 1e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||||||||| |||||||||||||||||||||| |||| |||| |||| |||
Sbjct 1823 ACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTCCTCC 1882
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || || | ||||| ||||| || || | |||||||| ||| |
Sbjct 1883 AGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGA 1942
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | ||||| ||||||||||| ||| |||||||||
Sbjct 1943 ATCTTCGACTTGACGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTCTTG 2002
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || || ||||| || |||||||||||
Sbjct 2003 CCGGTGAGCGTCTTGACGAAGATTTGCAT 2031
Score = 132 bits (146), Expect = 4e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||||||||| ||||||||| |||||||||||| |||| ||| | || |||
Sbjct 2051 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCCTCC 2110
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || |||| ||||| ||||| || || | |||||||||||| |
Sbjct 2111 AGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGA 2170
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | ||||| ||||||||||| ||| |||||||||
Sbjct 2171 ATCTTCGACTTGACGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTCTTG 2230
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
|| || || ||||| || |||||||||||| ||
Sbjct 2231 CCGGTGAGCGTCTTGACGAAGATTTGCATGATG 2263
>seq204
Length=21219
Score = 147 bits (162), Expect = 2e-30
Identities = 162/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||||||||||||||||||||| |||||||||||| || ||| |||| ||
Sbjct 5893 ACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 5834
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| |||| ||||| |||||||| || | ||||||||||||
Sbjct 5833 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 5774
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | ||||| | ||||||||| | ||| || ||||||
Sbjct 5773 ATCTTGGACTTGACATTGTCGATCGTGTCCGAGCTCTCCACCTCAAGGGTGATGGTCTTG 5714
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343
||||| || ||||| || ||||| ||||| ||||||
Sbjct 5713 CCCGTGAGGGTCTTGACGAAGATCTGCATCTTGCCT 5678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395070847258984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |