Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq376 504 6e-138 seq1 140 3e-28 seq233 131 1e-25 seq23 105 6e-18 seq204 89.7 5e-13 >seq376 Length=8930 Score = 504 bits (558), Expect = 6e-138 Identities = 1272/1907 (67%), Gaps = 76/1907 (4%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 || |||||| || ||||| || | | || |||| || ||||| || || ||||| || Sbjct 5099 CTGGTCCACCGTGAACTGGATCGGCTGCGCTGCCGCTTGCGTGCGCAGGTAGTACATACC 5158 Query 22165 CGTCTTCAGACCCATCTTCCA-CGCGTAAAAATGTATCGACGTCAATTTT--CCATAACT 22221 ||||| || |||| |||||| | ||||||| || || || ||| || ||||| | Sbjct 5159 GGTCTTGAGTCCCAACTTCCAGCCCGTAAAA-TGCATGCTGGT-AATCTTGCCCATAG-T 5215 Query 22222 CGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGC 22281 ||| | ||||| | |||| |||||| ||| ||||| ||||| || || ||||| Sbjct 5216 CGGTGCGCGCATGTGAATGTTGAGCGACTGCGACTGGTCGATGAACGCGCCACGGTCGGC 5275 Query 22282 GGCCATATTTATCAAT-GTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGA 22340 ||||| | | |||| || ||| ||| || ||||| || ||||||||||| | ||| Sbjct 5276 CGCCATCTGCA-CAATCGTGCGCTGCGAGATCTCCCACACTGTCTTGTACAGCGCCTTGA 5334 Query 22341 TCTCTAACGGTATCGATTCG--ATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATT 22398 | || ||| || |||| || ||||||| |||||| | ||||| || Sbjct 5335 TTTCAGCCGGGATG--TTCGGGATGTTCTGGACCGACCCGCCCTCTGCAATGATGCGGTT 5392 Query 22399 TTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAG--ATGACGGTTC 22456 || || | || ||||| || ||| | || || || | || ||| |||| Sbjct 5393 CTTCATGTTGTCCGACCACAGGCCCATGTCCACCAGGTCCTTCAGAAGCCATG--GGTTG 5450 Query 22457 ACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCG 22516 ||||| || |||||||| | || || ||||| ||||| |||||||| ||| | || ||| Sbjct 5451 ACCACCTGGAACTCGCCTGCCAGCACACGGCGCTGGTAGATGTTGGACGTGTATGGCTCG 5510 Query 22517 AAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGT 22576 || |||| ||||| ||||| ||||| | |||||| || |||||||||||||||| || Sbjct 5511 AAGCATTCGTTGTTGCCCAGGATCTGCGAGGTCGATGCCGTCGGCATCGGCGCCACCAAC 5570 Query 22577 AGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAG---CATCGA---CCAGT 22628 || ||| | || |||||||| |||| ||||||| || ||| ||||| Sbjct 5571 AGACTGTTGCGCACGCCGTGCTCCTTGA--------TCTTGAGACGCAGCGAGTCCCAGT 5622 Query 22629 CCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC--GCGACT 22686 ||||||| || | |||| | || |||||||||||| | |||| | ||| ||||| Sbjct 5623 CCCACAGGTCCGTCGGCTTGAC---GTCCCACATATCAAACTGCAGGATGCCCTGCGACA 5679 Query 22687 CGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGC 22746 || | | || |||||||| |||| || | | | || || ||||| ||| Sbjct 5680 CGGGAGAC--CCCTCGTACGTCGAGTACACGCCCTCCAGCTTCGCCAGGTCGCATGACGC 5737 Query 22747 CTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCG-GCGGC---GG 22802 | || ||| ||| || || ||||| ||||| | |||||| | || ||| | || Sbjct 5738 CGTCAGCGCAGCGTGGTAGATCGTCTCAAAGATCTGCTTGTTGAGCTCACGCGCCTCCGG 5797 Query 22803 CGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTA 22862 |||| || | ||||| |||| | || |||||| ||||||| ||||| || || | Sbjct 5798 CGAC----TCAAAAGGCATCCGCAGCGCCAGGAACGCATCCGCCAAGCCCTGGACACCCA 5853 Query 22863 TACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGATACCAA 22918 ||||||||| |||| || || || |||| ||| |||| ||| || | Sbjct 5854 CACCGATCGGCCGGTGACGCATGTTG----CTGTTGCGCGCCTCCGGCACAGGGTAGTAG 5909 Query 22919 TTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNN 22978 || ||||| | | ||||| ||| | ||| | | ||| | Sbjct 5910 TTGACGTCGATGATACGGTTCAGGTTGCGCACCACCACCTGCGTGACCTCGTGAAGCTTC 5969 Query 22979 TCAAAGTCGTAAACGCCCGATTG---TA--CAACAAACTTGTTGACGGCG--ATCGAGGC 23031 | |||||||| || | ||| || | ||||| | | | ||| | ||| | Sbjct 5970 TGGAAGTCGTA--CGTCTCGTTGGCGTAGTCCACAAAA--GACGGCAGCGCCAGCGACGA 6025 Query 23032 AAGATTGCATACGGCCACCTCGTCTTTGGACGTG---TACTCTACAATTTCGGTACATAG 23088 || ||||| || |||||||| || || || | ||||| | ||| || || || || Sbjct 6026 CAGGTTGCACACCGCCACCTCATC---GGGCGCGCAGTACTCGATAATCTCTGTGCACAG 6082 Query 23089 ATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTT 23148 ||| | || ||||||| || |||||||||| || || ||||| ||||| Sbjct 6083 GTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTT 6142 Query 23149 GTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGT 23208 ||| |||||| |||| |||| ||||| ||||| ||| | || || ||||| | Sbjct 6143 GTACAGCATGAACGGGTTGCCGGTCTCCGTCTGCGCCTCCAGGACGGCATACCACAGCTT 6202 Query 23209 CTGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGT 23267 ||| || | || ||| ||| | | ||| || | ||||||||| | |||||| || | Sbjct 6203 CTGGGCCTTGAC-CGTGCGACGGCCACGGCCCTCCTTCTCGTACTTCTCGTACAAGGCCT 6261 Query 23268 CAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCC 23327 | || ||| | ||||| ||||||||||| || || | | | || ||||| || ||| Sbjct 6262 CGAACTCGTCGCCGTAGCAGTCGGCCAGACCCGGGCACTCATTGGGGCACATCAGCGTCC 6321 Query 23328 ACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACA 23387 | || || || || || |||| || || ||||| ||||| || || ||||| Sbjct 6322 AGTCGCCGTTCTTCTCCACACGCTTCATGAACAGGTCCGGGATCCAGAGCGCCAGGAACA 6381 Query 23388 GTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACA 23447 | ||||||||||| |||||||| ||||| |||||| || || | || || |||| Sbjct 6382 GGTCGCGGGCGCGTACCTCCTCCTTGCCATGGTTCTTGCGCAGGTCGAGGAACTCGAACA 6441 Query 23448 CGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCT 23507 |||| |||||||||||||| ||||| | | || ||||| || | ||| || || |||| Sbjct 6442 CGTCAGCATGCCACGGCTCCAGGTAGATGCAGAAGGCGCCTGGCCGCTTGTTTCCACCCT 6501 Query 23508 GATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACG 23567 | || || || ||||||||||||||| |||| | ||||| || || | |||||||| | Sbjct 6502 GGTCCACATAGCGGGCCGTGTTGTTGAACACGCGCAGCATAGGGACAATGCCGTTGGATG 6561 Query 23568 CGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTA 23627 ||| ||| || | || || | || || | | ||| |||| | || | Sbjct 6562 TACCGTTGGTGCCGGCAATGTATGAGCCAGTGGCGCGGATGCGGTGGACGTTCATCCCGA 6621 Query 23628 TGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGA 23687 |||| || ||| || || ||||| ||||| || || ||||||||||||||||| | Sbjct 6622 TGCCACCCGCCGTCTTGGAGATCATAGCGCAAGTCTTGAGGGTGTCGTAGATGCCCTCAA 6681 Query 23688 TGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGG 23747 ||||||| || || | | |||| ||| ||||| | | || |||| |||||| | | Sbjct 6682 TGCTGTCATCCTTCATGTCAACCAGGAAGCACGACGCGAGCTGGGCTTGGGGCGTGCCAG 6741 Query 23748 CCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGTACGTG 23806 | ||| || || || ||||| || ||| | || ||||| ||| |||||||| Sbjct 6742 CGTTGAAAAGCGTGGGCGACGCGTGTGTGAAGAACTTGTTGGACATGTAG-TTGTACGTC 6800 Query 23807 TCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTAT 23866 || | | || || | || || || || |||| || |||||||| ||||||| Sbjct 6801 TCCAGGACGCGCTCCACGTTGTCGCCCCAGATCCCGACCGCCACGCGCATGATCATGTGC 6860 Query 23867 TGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTA 23926 || || | ||| || | |||||| | || | ||| || ||||| | || ||| || Sbjct 6861 TGGGGCCGCTCAACGATCTTGCCGTTGAGCTTAAGCAGGTACGAACGCTCCAGCGTCTTG 6920 Query 23927 AATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || ||||| || | ||||| ||||| || || | || ||||| || Sbjct 6921 AAGCCAAAGTATTGGTAGTTGAAGTCGCGGTCATAGACGATGGCAGA 6967 >seq1 Length=398088 Score = 140 bits (154), Expect = 3e-28 Identities = 224/315 (71%), Gaps = 10/315 (3%) Strand=Plus/Plus Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTG-CGGCAATATTTTGG 58037 |||| ||||| |||||||| || || ||||| ||| ||||| || | || || ||| Sbjct 36658 TCGCATTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGC-GCTTTCTCGTCCATCTTCTGG 36716 Query 58038 ATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGAC 58097 ||||||| ||||||||||||||||||||||| || ||||||| |||| ||||| ||| Sbjct 36717 CTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGAC 36776 Query 58098 GAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGAC- 58156 ||||| || || || || || || ||||| ||| ||| || | | || ||||| | Sbjct 36777 GAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTTCTCCCA---TCTGAA-GAACCGCCC 36832 Query 58157 --GCGGGATCG-CATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGT 58213 || || | || |||||| ||| ||| || ||| |||||| | ||||| | Sbjct 36833 CAGCAAGAAGGTTATTGAGGACATCATCGTCGATGCCGTCAAGATCGAGCAGGAGTTCCT 36892 Query 58214 CACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACAT 58273 |||||| || || || ||| |||| || |||||| | ||| ||||||| Sbjct 36893 CACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAACTCGACGCTCATGAAGCAGTACAT 36952 Query 58274 TGAGTTTGTTGCCGA 58288 ||||||||| ||||| Sbjct 36953 TGAGTTTGTGGCCGA 36967 >seq233 Length=18884 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || ||||| ||||||||| | || || || |||| Sbjct 2031 ATGCAAATCTTCGTCAAGACGCTCACCGGCAAGACGATCACCCTGGAGGTGGAGTCGTCG 1972 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||| ||||| ||| | ||||| |||||| Sbjct 1971 GACACGATCGACAACGTCAAGTCGAAGATTCAGGATAAGGAGGGCATCCCGCCGGACCAG 1912 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || || ||||| ||| |||| ||| | || ||||||| || ||| Sbjct 1911 CAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACCCTGAGCGACTACAAC 1852 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || ||||| || || ||||| || Sbjct 1851 ATTCAGAAGGAGTCGACGCTGCACCTGGTGCT 1820 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| || || ||||| ||||||||| | || || || |||| Sbjct 2260 CATGCAAATCTTCGTCAAGACGCTCACCGGCAAGACGATCACCCTGGAGGTGGAGTCGTC 2201 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || || ||||||||| ||| | ||||| ||||| Sbjct 2200 GGACACGATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCA 2141 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || || ||||| ||| |||| || || ||||||| || || Sbjct 2140 GCAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACGCTGAGCGACTACAA 2081 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || ||||| || || ||||| || | ||| | ||||||| Sbjct 2080 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTGCGCGGCGGTA 2031 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| ||||| || |||| || || Sbjct 1804 CATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACGATTACGCTCGAGGTGGAGAGCAG 1745 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | ||||| || || ||||||||| ||| | ||||| ||||| Sbjct 1744 CGACACGATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 1685 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||| ||||| ||| |||| || ||| || ||| || || Sbjct 1684 GCAGCGGCTGATTTTCGCGGGCAAGCAGCTGGAGGATGGGCGGACGCTGTCCGACTACAA 1625 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || || || || || ||||| || Sbjct 1624 CATTCAGAAGGAGAGCACGCTGCACCTGGTGCT 1592 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| ||||| || |||| || || Sbjct 1576 CATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACGATTACGCTCGAGGTGGAGAGCAG 1517 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | ||||| || || ||||||||| || | ||||| ||||| Sbjct 1516 CGACACGATTGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGGATCCCGCCGGACCA 1457 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || || ||||| ||| |||| ||| ||| || || || || Sbjct 1456 GCAGCGGCTGATCTTTGCGGGCAAGCAGCTGGAGGACGGGCGGACGCTGTCGGACTACAA 1397 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || ||||| || | ||| |||| || Sbjct 1396 CATCCAGAAGGAGAGCACGCTGCACCTGGTGCTGCGGCTGCGGGGTGG 1349 >seq23 Length=165582 Score = 105 bits (116), Expect = 6e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260 |||||| ||||| ||||| ||||| || ||||| | || || || | || |||| | Sbjct 62003 TTTCGTGAAGACCCTGACGGGCAAGACCATCACTTTGGAGGTCGAGTCCTCGGACACGAT 62062 Query 31261 CGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCT 31320 ||| | ||||| | || ||||||||| ||| | ||||| ||||||||||| || Sbjct 62063 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCT 62122 Query 31321 AATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAA 31380 || || || ||||| ||| |||| ||| ||| || ||| || ||||| || || Sbjct 62123 GATCTTTGCAGGCAAGCAGCTGGAGGACGGCCGGACCCTGTCCGACTACAACATCCAGAA 62182 Query 31381 AGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || |||||||| || ||||| || | ||| | || |||| Sbjct 62183 GGAGTCGACTCTGCACCTGGTGCTGCGTCTGCGCGGTGGTA 62223 >seq204 Length=21219 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| || || ||||| || |||||| | || || || Sbjct 5682 AAGATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGAGC 5741 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| | || ||||||||| ||| | ||||||||| Sbjct 5742 TCGGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGAC 5801 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||| || || ||||| ||||| ||| | || ||| Sbjct 5802 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGAC 5840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445761362839680