Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq376 118 1e-21
>seq376
Length=8930
Score = 118 bits (130), Expect = 1e-21
Identities = 296/446 (66%), Gaps = 8/446 (2%)
Strand=Plus/Plus
Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248
||||||||||| || | | | ||| | || || |||| || ||||||| || |
Sbjct 6261 TCGAACTCGTCGCCGTAGCAGTCGGCCAGACCCGGGCACTCATTGGGGCACATCAGCGTC 6320
Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63308
|| || |||| | || ||| || ||||| || || || || ||||| || || | ||
Sbjct 6321 CAGTCGCCGTTCTTCTCCACACGCTTCATGAACAGGTCCGGGATCCAGAGCGCCAGGAAC 6380
Query 63309 AGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63368
|| || | | | ||||| || || ||||| || ||||||||| | |
Sbjct 6381 AGGTCGCGGGCGCGTACCTCCTCCTTGCCATGGTTCTTGCGCAGGTCGAGGAACTCGAAC 6440
Query 63369 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA--CTCCAGGCCGTTTGTTTCCTC 63426
| |||| ||||||||| |||| ||| ||| || || | || ||||| |||||||| |
Sbjct 6441 ACGTCAGCATGCCACGGCTCCAGGTAGATG--CAGAAGGCGCCTGGCCGCTTGTTTCCAC 6498
Query 63427 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63486
|||| || | || | || ||||| || | || | || ||| || | ||| ||||| |
Sbjct 6499 CCTGGTCCACATAGCGGGCCGTGTTGTTGAACACGCGCAGCATAGGGACAATGCCGTTGG 6558
Query 63487 ATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATTGATAG 63544
|| |||| ||||| |||| || || ||| |||| || || | || ||
Sbjct 6559 ATGTACCGTTGGTGCCGGCAATGTATGAGCCAGTGGCGCGGATGCGGTGGACGTTCAT-- 6616
Query 63545 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCC 63604
|| || || || ||| | || ||||| | ||||| || | ||||| ||||||||
Sbjct 6617 CCCGATGCCACCCGCCGTCTTGGAGATCATAGCGCAAGTCTTGAGGGTGTCGTAGATGCC 6676
Query 63605 TTCTATGCTATCATCGATCATGTTAA 63630
|| ||||| ||||| |||||| ||
Sbjct 6677 CTCAATGCTGTCATCCTTCATGTCAA 6702
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629810483061120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |