Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq376 118 1e-21 >seq376 Length=8930 Score = 118 bits (130), Expect = 1e-21 Identities = 296/446 (66%), Gaps = 8/446 (2%) Strand=Plus/Plus Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 ||||||||||| || | | | ||| || || || |||| || ||||||| || | Sbjct 6261 TCGAACTCGTCGCCGTAGCAGTCGGCCAGACCCGGGCACTCATTGGGGCACATCAGCGTC 6320 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 66101 || || |||| | || ||| || ||||| || || || || ||||| || || | || Sbjct 6321 CAGTCGCCGTTCTTCTCCACACGCTTCATGAACAGGTCCGGGATCCAGAGCGCCAGGAAC 6380 Query 66102 AAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 66161 | || | || | ||||| || || ||||| || ||||||||| | | Sbjct 6381 AGGTCGCGGGCGCGTACCTCCTCCTTGCCATGGTTCTTGCGCAGGTCGAGGAACTCGAAC 6440 Query 66162 ATATCATAATGCCACGGTTCCAAGTATATGGCCATAA--CTCCAGGCCGTTTGTTTCCTC 66219 | ||| ||||||||| |||| ||| ||| || || | || ||||| |||||||| | Sbjct 6441 ACGTCAGCATGCCACGGCTCCAGGTAGATG--CAGAAGGCGCCTGGCCGCTTGTTTCCAC 6498 Query 66220 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 66279 |||| || | || | || ||||| || | || | || ||| || | ||| || |||| Sbjct 6499 CCTGGTCCACATAGCGGGCCGTGTTGTTGAACACGCGCAGCATAGGGACAATGCCGTTGG 6558 Query 66280 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT--ATTACTAATTGATAG 66337 ||||||| ||||| |||| || || ||| | || || || | || || Sbjct 6559 ATGTACCGTTGGTGCCGGCAATGTATGAGCCAGTGGCGCGGATGCGGTGGACGTTCAT-- 6616 Query 66338 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 66397 || || || || ||| | || ||||| | ||||| || | || || |||||||| Sbjct 6617 CCCGATGCCACCCGCCGTCTTGGAGATCATAGCGCAAGTCTTGAGGGTGTCGTAGATGCC 6676 Query 66398 CTCTATACTATCATCCATCATGTTAA 66423 ||| || || |||||| |||||| || Sbjct 6677 CTCAATGCTGTCATCCTTCATGTCAA 6702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658165362647360