Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq226 104 2e-17 seq407 89.7 4e-13 >seq226 Length=19278 Score = 104 bits (114), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 20889 GGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAA 20948 ||||| || || || | | | |||||| | |||||| || ||||||| | ||| Sbjct 16524 GGAAAGGGGCGGGGCGCGCGCGTCAGCTGGACGCGCAGGGCGTCGACGTGGTCGGCGTAG 16583 Query 20949 ACGTGGGCGTCACCCAAGGTGTG---CACAAAGTCTCCCGGGGTC-AGGCCCGTGACGTG 21004 ||||||||||| || | | ||| || || |||||| | ||||| |||| | Sbjct 16584 ACGTGGGCGTCGCCGAGGACGTGGGTCAGCGAG----CCGGGGACGAGGCCGCAGACGCG 16639 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 |||| || | || || |||||||||||||| ||||| || || || ||||||||||| Sbjct 16640 GGCGAGCATGTGGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACGCCGAGGCCCAT 16699 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAG 21092 |||| ||| | |||||| ||||||||| Sbjct 16700 GTCGCAGGAGCGCTGGTAGAGCTGGCAG 16727 >seq407 Length=7586 Score = 89.7 bits (98), Expect = 4e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 15825 GGGCGCGACGGTGATCAACCCCATTCCGGGGTTTTACGACGAGCCGGTCCTGGTGGTCGA 15884 ||| |||||||||||| | || | | | |||| ||| | |||||||| | | | || Sbjct 1685 GGGGGCGACGGTGATCGAGCCGGTGCGGCGGTTCTACAAGGAGCCGGTGGCGACGCTGGA 1744 Query 15885 TTTTGCCAGCCTGTACCCGAGCATCATCCAGGCGCACAACCTGTGCTAC 15933 ||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 1745 CTTTGCGTCGCTGTACCCGAGCATCATGCAGGCGCACAACCTGTGCTAC 1793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427771286977920