Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq233 111 2e-19
seq204 87.8 2e-12
>seq233
Length=18884
Score = 111 bits (122), Expect = 2e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||| | || | ||| | ||| ||||| || |||||||| || |||||
Sbjct 1804 GCCACCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 1863
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
|| |||| ||| || ||||| || || ||| |||| || || ||||| || || ||
Sbjct 1864 CAGGGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCGG 1923
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCA 139715
||||| || || || ||| | || | || | | || | ||||| | | |||||
Sbjct 1924 GATGCCCTCCTTATCC-TGAATCTTCGACTTGACGTTGTCGATCGTGTCCGACGACTCCA 1982
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||| | ||| | |||||||||||| | ||| || ||||| |||||||||
Sbjct 1983 CCTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCATA 2032
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
||||| || | || | || | ||| | ||| ||||| || || ||||| || ||||||
Sbjct 2033 CCGCCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 2092
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| || || ||||| || || ||| ||||||| || ||||| || || ||
Sbjct 2093 AGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 2152
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716
||||| || ||||| ||| | || | || | | || | ||||| | | ||||||
Sbjct 2153 ATGCCCTCCTTGTCC-TGAATCTTCGACTTGACGTTGTCGATCGTGTCCGACGACTCCAC 2211
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | ||| | |||||||||||| | ||| || ||||| ||||||||
Sbjct 2212 CTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2259
>seq204
Length=21219
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
|||||| || | |||| || | ||| | ||| ||| || || ||||| || |||
Sbjct 5912 GCCGCCACGCAGGCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGA 5853
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| |||| ||| |||||||| || || || ||||||| || ||||| ||||| ||
Sbjct 5852 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGG 5793
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
||||| || ||||| ||| || || | | || | ||||| | | ||||||
Sbjct 5792 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGCTCTCCAC 5733
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| ||| | |||||||| || | || || ||||| || |||||
Sbjct 5732 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 5685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496058394476800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |