Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq376 118 2e-21 >seq376 Length=8930 Score = 118 bits (130), Expect = 2e-21 Identities = 454/704 (64%), Gaps = 18/704 (3%) Strand=Plus/Plus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 ||||||||||| || | ||| | | || || || || | || ||||||| || | Sbjct 6261 TCGAACTCGTCGCCGTAGCAGTCGGCCAGACCCGGGCACTCATTGGGGCACATCAGCGTC 6320 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 79980 || || || | | || || || ||||| || || || || ||||| || || | || Sbjct 6321 CAGTCGCCGTTCTTCTCCACACGCTTCATGAACAGGTCCGGGATCCAGAGCGCCAGGAAC 6380 Query 79981 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 80040 || || | || | |||||| || || ||||| || ||||||||| | | Sbjct 6381 AGGTCGCGGGCGCGTACCTCCTCCTTGCCATGGTTCTTGCGCAGGTCGAGGAACTCGAAC 6440 Query 80041 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA--CTCCCGGTCGTTTGTTTCCTC 80098 | |||| ||||||||| |||| ||| ||| || || | || || || |||||||| | Sbjct 6441 ACGTCAGCATGCCACGGCTCCAGGTAGATG--CAGAAGGCGCCTGGCCGCTTGTTTCCAC 6498 Query 80099 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 80158 |||| || | || | || ||||| || | || | || ||| || | ||| || |||| Sbjct 6499 CCTGGTCCACATAGCGGGCCGTGTTGTTGAACACGCGCAGCATAGGGACAATGCCGTTGG 6558 Query 80159 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAG 80216 ||||||| ||||| |||| || || ||| |||| || || | || || Sbjct 6559 ATGTACCGTTGGTGCCGGCAATGTATGAGCCAGTGGCGCGGATGCGGTGGACGTTCAT-- 6616 Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 80276 || || || || ||| | || ||||| | ||||| || | || || |||||||| Sbjct 6617 CCCGATGCCACCCGCCGTCTTGGAGATCATAGCGCAAGTCTTGAGGGTGTCGTAGATGCC 6676 Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 80336 ||| ||||| ||||| |||||| || || || || | | ||| | || Sbjct 6677 CTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCACGACGCGAGCTGGGCTTGGGGCGT 6736 Query 80337 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTGT 80395 || || || || | || || || ||||| || || | || | |||| |||| |||| Sbjct 6737 GCCAGCGTTGAAAAGCGTGGGCGACGCGTGTGTGAAGAACTTGTTGGACATGTAG-TTGT 6795 Query 80396 ACGTCTCAATAGCTGATTCTA---TATC-CCATTGATGAATTCCTACCGCGACACGCATT 80451 ||||||| | | || | | || || | || || ||||| || ||||| Sbjct 6796 ACGTCTCCAGGACGCGCTCCACGTTGTCGCCCCAG----ATCCCGACCGCCACGCGCATG 6851 Query 80452 AACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCC 80511 | ||||||||| || | |||||||||||| || | || | || ||| || ||| Sbjct 6852 ATCATGTGCTGGGGCCGCTCAACGATCTTGCCGTTGAGCTTAAGCAGGTACGAACGCTCC 6911 Query 80512 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 80555 | || || || ||||| || | ||| ||||| || || || Sbjct 6912 AGCGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCGCGGTCATA 6955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718260683562560