Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq376 122 1e-22 >seq376 Length=8930 Score = 122 bits (134), Expect = 1e-22 Identities = 299/447 (67%), Gaps = 10/447 (2%) Strand=Plus/Plus Query 71944 TCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 ||||||||||| || | ||| | | | | || || || ||||| || ||||||| | Sbjct 6261 TCGAACTCGTCGCCGTA-GCAGTCGGCCAGACCCGGGCACTCATTGGGGCACATCAGCGT 6319 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 72062 ||| || || | | | || || ||||| || || || || ||||| || || | || Sbjct 6320 CCAGTCGCCGTTCTTCTCCACACGCTTCATGAACAGGTCCGGGATCCAGAGCGCCAGGAA 6379 Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122 || || | || | |||||| || || ||||| || ||||||||| | | Sbjct 6380 CAGGTCGCGGGCGCGTACCTCCTCCTTGCCATGGTTCTTGCGCAGGTCGAGGAACTCGAA 6439 Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA--CTCCCGGCCGTTTGTTTCCT 72180 | |||| ||||||||| |||| ||| ||| || || | || ||||| |||||||| Sbjct 6440 CACGTCAGCATGCCACGGCTCCAGGTAGATG--CAGAAGGCGCCTGGCCGCTTGTTTCCA 6497 Query 72181 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 72240 ||||| || | || | || ||||| || | || | || ||| || | ||| || ||| Sbjct 6498 CCCTGGTCCACATAGCGGGCCGTGTTGTTGAACACGCGCAGCATAGGGACAATGCCGTTG 6557 Query 72241 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAA--TTGATA 72298 |||| ||| ||||| |||| || || ||| |||| || || | | || || Sbjct 6558 GATGTACCGTTGGTGCCGGCAATGTATGAGCCAGTGGCGCGGATGCGGTGGACGTTCATC 6617 Query 72299 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 72358 || || || || ||| | || ||||| | ||||| || | || || ||||||| Sbjct 6618 --CCGATGCCACCCGCCGTCTTGGAGATCATAGCGCAAGTCTTGAGGGTGTCGTAGATGC 6675 Query 72359 CCTCTATACTATCATCCATCATGTTAA 72385 |||| || || |||||| |||||| || Sbjct 6676 CCTCAATGCTGTCATCCTTCATGTCAA 6702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671131616127040