Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq376 122 1e-22
>seq376
Length=8930
Score = 122 bits (134), Expect = 1e-22
Identities = 299/447 (67%), Gaps = 10/447 (2%)
Strand=Plus/Plus
Query 71944 TCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002
||||||||||| || | ||| | | | | || || || ||||| || ||||||| |
Sbjct 6261 TCGAACTCGTCGCCGTA-GCAGTCGGCCAGACCCGGGCACTCATTGGGGCACATCAGCGT 6319
Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 72062
||| || || | | | || || ||||| || || || || ||||| || || | ||
Sbjct 6320 CCAGTCGCCGTTCTTCTCCACACGCTTCATGAACAGGTCCGGGATCCAGAGCGCCAGGAA 6379
Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122
|| || | || | |||||| || || ||||| || ||||||||| | |
Sbjct 6380 CAGGTCGCGGGCGCGTACCTCCTCCTTGCCATGGTTCTTGCGCAGGTCGAGGAACTCGAA 6439
Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA--CTCCCGGCCGTTTGTTTCCT 72180
| |||| ||||||||| |||| ||| ||| || || | || ||||| ||||||||
Sbjct 6440 CACGTCAGCATGCCACGGCTCCAGGTAGATG--CAGAAGGCGCCTGGCCGCTTGTTTCCA 6497
Query 72181 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 72240
||||| || | || | || ||||| || | || | || ||| || | ||| || |||
Sbjct 6498 CCCTGGTCCACATAGCGGGCCGTGTTGTTGAACACGCGCAGCATAGGGACAATGCCGTTG 6557
Query 72241 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAA--TTGATA 72298
|||| ||| ||||| |||| || || ||| |||| || || | | || ||
Sbjct 6558 GATGTACCGTTGGTGCCGGCAATGTATGAGCCAGTGGCGCGGATGCGGTGGACGTTCATC 6617
Query 72299 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 72358
|| || || || ||| | || ||||| | ||||| || | || || |||||||
Sbjct 6618 --CCGATGCCACCCGCCGTCTTGGAGATCATAGCGCAAGTCTTGAGGGTGTCGTAGATGC 6675
Query 72359 CCTCTATACTATCATCCATCATGTTAA 72385
|||| || || |||||| |||||| ||
Sbjct 6676 CCTCAATGCTGTCATCCTTCATGTCAA 6702
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671131616127040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |