Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq233 86.0 6e-12
>seq233
Length=18884
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| || || || || |||||||| ||||||| |||| || || || || || ||
Sbjct 2063 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCCTCCAGCTGCTTGCCC 2122
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
||| ||||||| || ||||| || || || ||||| || ||||| ||| || ||
Sbjct 2123 GCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATCTTCGACTTG 2182
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | |||||||| | || || || | || | |||||||||||| | ||
Sbjct 2183 ACGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTCTTGCCGGTGAGCGTC 2242
Query 143168 TTTACGAATATTTGCAT 143184
|| ||||| ||||||||
Sbjct 2243 TTGACGAAGATTTGCAT 2259
Score = 82.4 bits (90), Expect = 8e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| || || || || |||||||| ||||||| |||| ||| || || || || ||
Sbjct 1835 GTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTCCTCCAGCTGCTTGCCC 1894
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
||| |||| || || ||||| || || || ||||| || || || ||| || ||
Sbjct 1895 GCAAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGAATCTTCGACTTG 1954
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | |||||||| | || || || | || | |||||||||||| | ||
Sbjct 1955 ACGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTCTTGCCGGTGAGCGTC 2014
Query 143168 TTTACGAATATTTGCATA 143185
|| ||||| |||||||||
Sbjct 2015 TTGACGAAGATTTGCATA 2032
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507008670737280
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |