Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq233 86.0 6e-12 >seq233 Length=18884 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||||||| |||| || || || || || || Sbjct 2063 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCCTCCAGCTGCTTGCCC 2122 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| ||||||| || ||||| || || || ||||| || ||||| ||| || || Sbjct 2123 GCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATCTTCGACTTG 2182 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||||| | || || || | || | |||||||||||| | || Sbjct 2183 ACGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTCTTGCCGGTGAGCGTC 2242 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| |||||||| Sbjct 2243 TTGACGAAGATTTGCAT 2259 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||||||| |||| ||| || || || || || Sbjct 1835 GTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTCCTCCAGCTGCTTGCCC 1894 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| || || ||||| || || || ||||| || || || ||| || || Sbjct 1895 GCAAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGAATCTTCGACTTG 1954 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||||| | || || || | || | |||||||||||| | || Sbjct 1955 ACGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTCTTGCCGGTGAGCGTC 2014 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| ||||||||| Sbjct 2015 TTGACGAAGATTTGCATA 2032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507008670737280