Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq376 199 6e-46
seq1 167 3e-36
>seq376
Length=8930
Score = 199 bits (220), Expect = 6e-46
Identities = 331/473 (70%), Gaps = 4/473 (1%)
Strand=Plus/Minus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| || || || ||||||||||| | | ||||| |||| || ||||| || |||
Sbjct 6502 CAGGGTGGAAACAAGCGGCCAGGCGCCTTCTGCATCTACCTGGAGCCGTGGCATGCTGAC 6443
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| || || || |||| ||||||| ||| |||| || |||| ||| ||| | |||
Sbjct 6442 GTGTTCGAGTTCCTCGACCTGCGCAAGAACCATGGCAAGGAGGAGGTACGCGCCCGCGAC 6383
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
|||| || |||||| | || || ||||||||||||| || | | ||| ||
Sbjct 6382 CTGTTCCTGGCGCTCTGGATCCCGGACCTGTTCATGAAGCGTGTGGAGAAGAACGGCGAC 6323
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| || ||||||||| | || || |||||| |||| |||| ||||| |||||
Sbjct 6322 TGGACGCTGATGTGCCCCAATGAGTGCCCGGGTCTGGCCGACTGCTACGGCGACGAGTTC 6263
Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCACG 97174
|||||| |||| | |||||| | |||||||| ||| ||| ||| | || |
Sbjct 6262 GAGGCCTTGTACGAGAAGTACGAGAAGGAGGGCCGTGGCCGTCGCACG-GTCAAGGC-CC 6205
Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233
|||| |||||| | ||| || || ||| ||| ||||| || | |||| ||| || |
Sbjct 6204 AGAAGCTGTGGTATGCCGTCCTGGAGGCGCAGACGGAGACCGGCAACCCGTTCATGCTGT 6145
Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293
||||||| | || ||||| |||||||| || ||||||||||| ||||||
Sbjct 6144 ACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGCAGCTCCA 6085
Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346
| |||||||| || ||| | |||||| | | || || ||| ||| || |||
Sbjct 6084 ACCTGTGCACAGAGATTATCGAGTACTGCGCGCCCGATGAGGTGGCGGTGTGC 6032
>seq1
Length=398088
Score = 167 bits (184), Expect = 3e-36
Identities = 351/519 (68%), Gaps = 27/519 (5%)
Strand=Plus/Plus
Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420
|| || || ||||| | |||| |||| |||||| ||| | ||||| | | ||
Sbjct 36588 ATCCGCAAGAAGGCCGACTGGGCCCTTCGCTGGATCTCCGACAAGGAGTCTACCTTTGCG 36647
Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480
| | ||||| |||||||| ||||| |||||||||||||| || ||| || ||
Sbjct 36648 CAGCGTCTGGTCGCATTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGCGCTTTCTCGTCC 36707
Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540
||||| ||||| ||||||||||| || |||||||| ||||| | |||||| | ||
Sbjct 36708 ATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTGATC 36767
Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGT 125600
|| || ||||||||||| ||| ||||| ||| || ||||| | | |||||
Sbjct 36768 TCGCGTGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTT---CTCCCATCTG--- 36821
Query 125601 CCCGAGTGCAGATCCAGCGATGAAAAGGTCAT------CAACATTGTAACCGATGCCGTG 125654
|| | | ||||| | ||||| || || ||| || |||||||||
Sbjct 36822 ---AAGAACCGCCCCAGC---AAGAAGGTTATTGAGGACATCATCGT---CGATGCCGTC 36872
Query 125655 AGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGC 125714
| ||| || || ||||| || ||||| | || || | | || | ||||||||||
Sbjct 36873 AAGATCGAGCAGGAGTTCCTCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAACTCG 36932
Query 125715 AAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC 125774
| ||| ||| ||||||| ||||||||||| ||||| || ||| | | | |||
Sbjct 36933 ACGCTCATGAAGCAGTACATTGAGTTTGTGGCCGATCGCCTGCTG---GTTTCTCTCGGC 36989
Query 125775 --CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAG 125831
|| |||| | ||| | | | || |||||||| |||||| | ||| || || |
Sbjct 36990 AACGACAAGGTGTACCGCTCGAGCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGC 37049
Query 125832 GGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870
|| ||||||||||| || |||||| ||| |||| |||
Sbjct 37050 GGCAAGACCAACTTCTTTGAGAAGCGTGTCGGCGACTAC 37088
Score = 141 bits (156), Expect = 1e-28
Identities = 206/289 (71%), Gaps = 4/289 (1%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| | |||||||| |||||| ||||||| || ||||||| || ||| ||||||||
Sbjct 36190 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACGGCTGAGGAGATCGATCTG 36249
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
||||||||| || |||| ||| | | || |||| || ||||| || |||||
Sbjct 36250 TCCAAGGACATGCACGACTGGAACAACCGCCTGACCGATGACGAGCGGTTCTTCATATCC 36309
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198
||||| | |||||||| |||| || ||||| || |||||||| || ||| | ||
Sbjct 36310 CACATCCTTGCCTTCTTCGCCGCGTCGGATGGCATTGTCAACGAGAACCTGGTCGAGCGC 36369
Query 125199 TTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGA 125256
||| ||| | ||| |||| |||| || || ||||| ||||| |||||||
Sbjct 36370 TTCAGCGGCGAG--GTCCAGGTTCCCGAGGCCCGTTGTTTCTACGGCTTCCAGATCATGA 36427
Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305
| |||||| | ||||| || | |||||| || || |||| |||||
Sbjct 36428 TGGAGAACATCCACTCTGAGACCTACTCTCTGCTCATCGACACATACAT 36476
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741050826031040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |