Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq376 199 6e-46 seq1 167 3e-36 >seq376 Length=8930 Score = 199 bits (220), Expect = 6e-46 Identities = 331/473 (70%), Gaps = 4/473 (1%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| || || || ||||||||||| | | ||||| |||| || ||||| || ||| Sbjct 6502 CAGGGTGGAAACAAGCGGCCAGGCGCCTTCTGCATCTACCTGGAGCCGTGGCATGCTGAC 6443 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || |||| ||||||| ||| |||| || |||| ||| ||| | ||| Sbjct 6442 GTGTTCGAGTTCCTCGACCTGCGCAAGAACCATGGCAAGGAGGAGGTACGCGCCCGCGAC 6383 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 |||| || |||||| | || || ||||||||||||| || | | ||| || Sbjct 6382 CTGTTCCTGGCGCTCTGGATCCCGGACCTGTTCATGAAGCGTGTGGAGAAGAACGGCGAC 6323 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || ||||||||| | || || |||||| |||| |||| ||||| ||||| Sbjct 6322 TGGACGCTGATGTGCCCCAATGAGTGCCCGGGTCTGGCCGACTGCTACGGCGACGAGTTC 6263 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCACG 97174 |||||| |||| | |||||| | |||||||| ||| ||| ||| | || | Sbjct 6262 GAGGCCTTGTACGAGAAGTACGAGAAGGAGGGCCGTGGCCGTCGCACG-GTCAAGGC-CC 6205 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| |||||| | ||| || || ||| ||| ||||| || | |||| ||| || | Sbjct 6204 AGAAGCTGTGGTATGCCGTCCTGGAGGCGCAGACGGAGACCGGCAACCCGTTCATGCTGT 6145 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 ||||||| | || ||||| |||||||| || ||||||||||| |||||| Sbjct 6144 ACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGCAGCTCCA 6085 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 | |||||||| || ||| | |||||| | | || || ||| ||| || ||| Sbjct 6084 ACCTGTGCACAGAGATTATCGAGTACTGCGCGCCCGATGAGGTGGCGGTGTGC 6032 >seq1 Length=398088 Score = 167 bits (184), Expect = 3e-36 Identities = 351/519 (68%), Gaps = 27/519 (5%) Strand=Plus/Plus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420 || || || ||||| | |||| |||| |||||| ||| | ||||| | | || Sbjct 36588 ATCCGCAAGAAGGCCGACTGGGCCCTTCGCTGGATCTCCGACAAGGAGTCTACCTTTGCG 36647 Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 | | ||||| |||||||| ||||| |||||||||||||| || ||| || || Sbjct 36648 CAGCGTCTGGTCGCATTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGCGCTTTCTCGTCC 36707 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540 ||||| ||||| ||||||||||| || |||||||| ||||| | |||||| | || Sbjct 36708 ATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTGATC 36767 Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGT 125600 || || ||||||||||| ||| ||||| ||| || ||||| | | ||||| Sbjct 36768 TCGCGTGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTT---CTCCCATCTG--- 36821 Query 125601 CCCGAGTGCAGATCCAGCGATGAAAAGGTCAT------CAACATTGTAACCGATGCCGTG 125654 || | | ||||| | ||||| || || ||| || ||||||||| Sbjct 36822 ---AAGAACCGCCCCAGC---AAGAAGGTTATTGAGGACATCATCGT---CGATGCCGTC 36872 Query 125655 AGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGC 125714 | ||| || || ||||| || ||||| | || || | | || | |||||||||| Sbjct 36873 AAGATCGAGCAGGAGTTCCTCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAACTCG 36932 Query 125715 AAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC 125774 | ||| ||| ||||||| ||||||||||| ||||| || ||| | | | ||| Sbjct 36933 ACGCTCATGAAGCAGTACATTGAGTTTGTGGCCGATCGCCTGCTG---GTTTCTCTCGGC 36989 Query 125775 --CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAG 125831 || |||| | ||| | | | || |||||||| |||||| | ||| || || | Sbjct 36990 AACGACAAGGTGTACCGCTCGAGCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGC 37049 Query 125832 GGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || ||||||||||| || |||||| ||| |||| ||| Sbjct 37050 GGCAAGACCAACTTCTTTGAGAAGCGTGTCGGCGACTAC 37088 Score = 141 bits (156), Expect = 1e-28 Identities = 206/289 (71%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| |||||| ||||||| || ||||||| || ||| |||||||| Sbjct 36190 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACGGCTGAGGAGATCGATCTG 36249 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||| || |||| ||| | | || |||| || ||||| || ||||| Sbjct 36250 TCCAAGGACATGCACGACTGGAACAACCGCCTGACCGATGACGAGCGGTTCTTCATATCC 36309 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||||| | |||||||| |||| || ||||| || |||||||| || ||| | || Sbjct 36310 CACATCCTTGCCTTCTTCGCCGCGTCGGATGGCATTGTCAACGAGAACCTGGTCGAGCGC 36369 Query 125199 TTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGA 125256 ||| ||| | ||| |||| |||| || || ||||| ||||| ||||||| Sbjct 36370 TTCAGCGGCGAG--GTCCAGGTTCCCGAGGCCCGTTGTTTCTACGGCTTCCAGATCATGA 36427 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 | |||||| | ||||| || | |||||| || || |||| ||||| Sbjct 36428 TGGAGAACATCCACTCTGAGACCTACTCTCTGCTCATCGACACATACAT 36476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741050826031040