Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq898 131 1e-25 seq407 82.4 7e-11 >seq898 Length=67485 Score = 131 bits (144), Expect = 1e-25 Identities = 389/577 (67%), Gaps = 56/577 (10%) Strand=Plus/Minus Query 99274 CTCCAGTCGA-CGCCGCCGC--GGCCGTGCTGCTCCAGGA---ACGCGTTGGCCTCGGCA 99327 |||||||||| | || |||| |||||| | |||||| | ||||||| ||| | Sbjct 59879 CTCCAGTCGATCTCCCCCGCCGGGCCGTACCGCTCCATCAGCCACGCGTTCGCCGTGCGG 59820 Query 99328 AAGTGCGTGCAGGTGACGAAG----GGCGCCCGCGACAGCGGCGAGGGGTGGCTG-TGCG 99382 |||||| |||| || ||| || || ||| |||||| ||||| | |||| Sbjct 59819 AAGTGCCCGCAGTCGAAGAACCCCCGGTGCGCGCT-CAGCGGGCTCGGGTGCACGCTGCG 59761 Query 99383 TCAGCACGAGGTGCCGCTTCCCGGC----CGCCCCAAAGGCC-CGCTGGGCGTGCGCGCC 99437 |||||| ||||||||||| | | | ||| ||| || ||| | || ||| ||| Sbjct 59760 -CAGCACCAGGTGCCGCTTGCTGTCGATGCGCGCCACGCGCTTCGCCGC-CG-GCGAGCC 59704 Query 99438 CCAGAGCATGAACACCAT--CGGGC---CGCC-CTGCGCGCTCAGGCGGGCCA-GCACCG 99490 ||| || || || | || || |||| ||||||| |||| | || || | | Sbjct 59703 CCACGCCACAAAGACGACGCCGTGCGCGCGCCGCTGCGCGACCAGGTCGATCACGCGCTG 59644 Query 99491 CGTGCACCAGCCGCCCCCAGCCCAGGCTGGCGTGCGAGCCCGGCGCCCCGCTC-CGCACG 99549 |||| ||| || ||||||| || ||||||||||| ||| | || | ||||| Sbjct 59643 CGTGAACC----GCTCCCAGCCGTGGTTGGCGTGCGAGTT-GGCCTCGTGCGCGCGCACC 59589 Query 99550 GTGAGCGAGGTGTTGAGCAGCAGCACGCCGCGGCGCGCCCAGGCC-TC--CAGGCAGCCG 99606 || || | ||||||||||||||||||||||| ||||| ||| || ||||| |||| Sbjct 59588 GTCAGGCACGTGTTGAGCAGCAGCACGCCGCGCTCGGCCCACGCCGTCAGCAGGCCGCCG 59529 Query 99607 ------------TGCTGCGGCCGCG---GG---GTCCCGGGGAAGTTCTTCTGCACGGCC 99648 ||| |||| ||| || ||| | ||| ||| || ||| | || Sbjct 59528 CCCGCGCCGTTCTGCGTCGGCGGCGCCCGGAACGTCGCCGGGTAGTCGTTGCGCAGGCCC 59469 Query 99649 GCGTAGATGTTCTGGAGGCTGGGCGGGATCGGAACGCCGCGG-TTCACGCTGAAGGCCAG 99707 |||| | ||| | || ||||| | | || | |||| ||||| ||| ||||| Sbjct 59468 ACGTACACGTTGCGCAGCGACGGCGGCGGCAGCAC-CGGCGGCTTCACCGAGAACGCCAG 59410 Query 99708 GCCGTGGGCCTGCCCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGACCTTGACGTC 99767 ||||| |||||||||||| ||||||| ||||||||||||| ||| || |||||||| || Sbjct 59409 CCCGTGTGCCTGCCCGTGGTTGTGGTACGGGTCCTGGCCCACGATCACCACCTTGACCTC 59350 Query 99768 CTCGGGCGCCGCGTAGCGCGTCCACGCGAAGACGTCC 99804 | || || ||| |||| ||||| | | |||||| Sbjct 59349 GTGCACCGGCGTGTACCGCGACCACGAGTACACGTCC 59313 >seq407 Length=7586 Score = 82.4 bits (90), Expect = 7e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 47341 GCCTCGCCGCGCACGAGCGTGGTGAAGCACAGGTTGTGCGCCTGGATGATGCTGGGGTAG 47400 ||| ||| || ||| ||||| ||| ||||||||||||||||||| |||||||| ||||| Sbjct 1816 GCCGCGCTGCTCACCAGCGTCGTGTAGCACAGGTTGTGCGCCTGCATGATGCTCGGGTAC 1757 Query 47401 AGGCTGGCAAAGTCCAGC 47418 || |||||||||||| Sbjct 1756 AGCGACGCAAAGTCCAGC 1739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440894217839040