Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_006151.1 Length=143461 Score E Sequences producing significant alignments: (Bits) Value seq898 96.9 3e-15 seq407 95.1 1e-14 >seq898 Length=67485 Score = 96.9 bits (106), Expect = 3e-15 Identities = 235/350 (67%), Gaps = 36/350 (10%) Strand=Plus/Minus Query 94150 GAGCCGCGCCCAGCCGAGCGGGGCGTGGGAGCCGGGGACCCCGCGC---CGCACGGTCAG 94206 || |||| |||||||| | |||||| ||| || || || || ||||| ||||| Sbjct 59640 GAACCGCTCCCAGCCGTGGTTGGCGTGCGAGTTGG---CCTCGTGCGCGCGCACCGTCAG 59584 Query 94207 CGTCGTGTTCAGCAGCAGCACCCCGCGGCGCGCCCAGGCC-TC--CAGGCAGCCGTGGGC 94263 |||||| ||||||||||| ||||| ||||| ||| || ||||| |||| || Sbjct 59583 GCACGTGTTGAGCAGCAGCACGCCGCGCTCGGCCCACGCCGTCAGCAGGCCGCCGCCCGC 59524 Query 94264 GG------GCGCGGGCAGCGTCGGGTACGTCGCCCGGAC-------CGCCG-----CGAA 94305 | ||| ||| ||| | || |||||||| || ||| | || | Sbjct 59523 GCCGTTCTGCGTCGGCGGCGCCCGGAACGTCGCCGGGTAGTCGTTGCGCAGGCCCACGTA 59464 Query 94306 GATGTTGGCCAGGCTCGGGGGGATCGGCACCCCGCGCCGG----ACGCTGAAGGCCAGCC 94361 | |||| ||| ||| || ||||| | | || ||| || ||| ||||||| Sbjct 59463 CACGTTGCGCAGCGACGGCGG---CGGCAGCAC-CGGCGGCTTCACCGAGAACGCCAGCC 59408 Query 94362 CGTGGGCCTGGCCCGGCCCGTGGTACGGGTCCTGGCCGATGATGACCACCTTGACGTCCT 94421 |||| ||||| || | |||||||||||||||||| | ||| ||||||||||| || | Sbjct 59407 CGTGTGCCTGCCCGTGGTTGTGGTACGGGTCCTGGCCCACGATCACCACCTTGACCTCGT 59348 Query 94422 CGGGCGCCGTGAGGCGCGTCCAGGCGAACACGTCCTCGCGC-GCGGGCAG 94470 || |||| |||| ||| | | ||||||||||| || ||||| || Sbjct 59347 GCACCGGCGTGTACCGCGACCACGAGTACACGTCCTCGGGCGGCGGGAAG 59298 >seq407 Length=7586 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 27264 GGGCGCCAAGGTGCTCGAGCCCGACTCGGGCTTCCACGTGGACCCGGTGCTCGTGCTGGA 27323 ||| || | |||| ||||||| | | | ||| || ||| |||||| |||||| Sbjct 1685 GGGGGCGACGGTGATCGAGCCGGTGCGGCGGTTCTACAAGGAGCCGGTGGCGACGCTGGA 1744 Query 27324 CTTTGCCAGCCTGTACCCGAGCATCATCCAGGCGCACAACCTGTGCTTCACGACGCT 27380 |||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 1745 CTTTGCGTCGCTGTACCCGAGCATCATGCAGGCGCACAACCTGTGCTACACGACGCT 1801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458942013896640