Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq338 174 2e-39 seq121 100 4e-17 >seq338 Length=10106 Score = 174 bits (192), Expect = 2e-39 Identities = 201/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||| ||| || || ||||| || || ||||||||||| ||||| Sbjct 1604 GCCAAGCGTCACCGGAAGAT-TCTCCGTGACAACATTCAGGGCATCACCAAGCCTGCTAT 1662 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| |||||||| || ||||||||| |||||| | |||| || |||| Sbjct 1663 CCGCCGTCTGGCGCGTCGTGGCGGTGTCAAGCGTATCTCTGCGCTCATCTACGAGGAGAC 1722 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | |||| | ||| |||||| || ||| |||| ||||| || ||| ||||| Sbjct 1723 CCGCGGTGTTCTCAAGTCCTTCCTGGAGGGCGTCATCCGCGATGCCGTCACCTACACCGA 1782 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| || ||||| | ||||| || |||| || ||||| Sbjct 1783 GCACGCCAAGCGGAAGACGGTCACGTCGCTGGATGTTGTCTACGCGCTGAAGCGGCAAGG 1842 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| || ||||| Sbjct 1843 CCGCACCCTGTACGGTTTCGGTGGTTAA 1870 >seq121 Length=32104 Score = 100 bits (110), Expect = 4e-17 Identities = 85/102 (83%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | ||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 12749 GCCAAGCGCCACCGGAAGAT-TCTTCGCGACAACATCCAGGGCATCACCAAGCCTGCTAT 12691 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGG 16533 || |||||||| |||||||| || ||||||||| ||||||| Sbjct 12690 TCGGCGTCTGGCCCGTCGTGGCGGTGTCAAGCGTATCTCTGG 12649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074373466472